BLASTX nr result

ID: Dioscorea21_contig00032134 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00032134
         (731 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago t...   121   1e-25
ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH...   106   6e-21
emb|CBI25341.3| unnamed protein product [Vitis vinifera]              106   6e-21
ref|XP_002520888.1| snf2 histone linker phd ring helicase, putat...   106   6e-21
emb|CAN69425.1| hypothetical protein VITISV_043713 [Vitis vinifera]   103   4e-20

>ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula]
           gi|355516770|gb|AES98393.1| ATP-dependent helicase,
           putative [Medicago truncatula]
          Length = 1764

 Score =  121 bits (304), Expect = 1e-25
 Identities = 74/182 (40%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
 Frame = -3

Query: 546 MGRRKARPIRSEGILSDIGVADSTNSDEKLNNDGQLEAVNGNANEQVLESQKSFYINIDR 367
           MGRRK++P RS GI+ +   +  T  +           V G  N    +  K +++ +DR
Sbjct: 1   MGRRKSKPHRSGGIIVETNASAETELE-----------VGGKENNDFGDIYKPYFVEVDR 49

Query: 366 NHCDFDEHFDIAEIILNDVRFPVGDVVDRSSGDKV-DPEFSLRFKL--IGVEESSFRLGH 196
           +    DEH DI+EI+L D+    G      S D   DP+FSLRF+L  IG +    +LGH
Sbjct: 50  SGWLSDEHLDISEIVLRDLNIGEGFYGFELSEDFYQDPQFSLRFRLCNIGSDLGRIKLGH 109

Query: 195 WPVLSADSIFLECIFLDNSTSEGGSKSKVLLSGVFDGPDEGVSGLVHLVSQKLLTIRLVS 16
           WPVL    I LE  F+  ++ +      VLLSG+FDGPDE VSGLVHL S K +T+R V 
Sbjct: 110 WPVLPYTDIHLE--FVKRASVDDTETCTVLLSGIFDGPDESVSGLVHLASMKFVTLRAVL 167

Query: 15  GV 10
           G+
Sbjct: 168 GI 169


>ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera]
          Length = 1704

 Score =  106 bits (264), Expect = 6e-21
 Identities = 74/190 (38%), Positives = 109/190 (57%), Gaps = 11/190 (5%)
 Frame = -3

Query: 546 MGRRKA-RPIRSEGILSDIGVADSTNSDEKLNNDGQLEAVNGNANEQVLESQKSFYINID 370
           MGRRK  +P RS G++  +   ++   +  LN+  Q E   G   ++V +++   ++ +D
Sbjct: 1   MGRRKQPKPHRSVGVVERLETQETAEGE--LNS--QQEHAQG---DEVGDAETPLFVEVD 53

Query: 369 RNHCDFDEHFDIAEIILNDVR-------FPVGDVVDRSSGDKVDPEFSLRFKLIGVEE-- 217
           R      EH DI+EI+LND+        + +G+      G   + +  LRF+L    +  
Sbjct: 54  RTGWGSGEHLDISEIVLNDLNLREEFHGYSLGE------GFYENSKCCLRFRLCNANQFV 107

Query: 216 SSFRLGHWPVLSADSIFLECIFLDNSTSEGGSKS-KVLLSGVFDGPDEGVSGLVHLVSQK 40
              RLGHWPV++A SI LE  F++   SE G ++  V+LSG+FDGPDEGVSGLVHL   K
Sbjct: 108 GRIRLGHWPVVAASSISLE--FVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLK 165

Query: 39  LLTIRLVSGV 10
           LLT+R V GV
Sbjct: 166 LLTLRPVLGV 175


>emb|CBI25341.3| unnamed protein product [Vitis vinifera]
          Length = 1717

 Score =  106 bits (264), Expect = 6e-21
 Identities = 74/190 (38%), Positives = 109/190 (57%), Gaps = 11/190 (5%)
 Frame = -3

Query: 546 MGRRKA-RPIRSEGILSDIGVADSTNSDEKLNNDGQLEAVNGNANEQVLESQKSFYINID 370
           MGRRK  +P RS G++  +   ++   +  LN+  Q E   G   ++V +++   ++ +D
Sbjct: 1   MGRRKQPKPHRSVGVVERLETQETAEGE--LNS--QQEHAQG---DEVGDAETPLFVEVD 53

Query: 369 RNHCDFDEHFDIAEIILNDVR-------FPVGDVVDRSSGDKVDPEFSLRFKLIGVEE-- 217
           R      EH DI+EI+LND+        + +G+      G   + +  LRF+L    +  
Sbjct: 54  RTGWGSGEHLDISEIVLNDLNLREEFHGYSLGE------GFYENSKCCLRFRLCNANQFV 107

Query: 216 SSFRLGHWPVLSADSIFLECIFLDNSTSEGGSKS-KVLLSGVFDGPDEGVSGLVHLVSQK 40
              RLGHWPV++A SI LE  F++   SE G ++  V+LSG+FDGPDEGVSGLVHL   K
Sbjct: 108 GRIRLGHWPVVAASSISLE--FVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLK 165

Query: 39  LLTIRLVSGV 10
           LLT+R V GV
Sbjct: 166 LLTLRPVLGV 175


>ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
           gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring
           helicase, putative [Ricinus communis]
          Length = 1588

 Score =  106 bits (264), Expect = 6e-21
 Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 7/185 (3%)
 Frame = -3

Query: 546 MGRRK-ARPIRSEGILSDIGVADSTNSDEKLNNDGQLEAVNGNANEQVLESQKSFYINID 370
           MGRRK ARP RS G++         NS  +   D Q +A   ++ E+ +   + +Y+ +D
Sbjct: 1   MGRRKQARPNRSGGLVI-------ANSASEAELDKQ-KAPKTDSAEKAIPVSRPYYVEVD 52

Query: 369 RNHCDFDEHFDIAEIILNDVRFPVGDVVDR---SSGDKVDPEFSLRFKLIGVEE---SSF 208
           +++   ++HFDI+E+ILND+   +G+        S    + ++SLR ++  V+       
Sbjct: 53  KSNWVSNDHFDISEVILNDLN--LGEAYSSCRIKSNFSQESKYSLRVRVCNVDGFVLDRI 110

Query: 207 RLGHWPVLSADSIFLECIFLDNSTSEGGSKSKVLLSGVFDGPDEGVSGLVHLVSQKLLTI 28
           +LG+WPVLS+  I LECI  + S  E      V+ SG FDGPDEG++ LVHL+S + LT+
Sbjct: 111 KLGYWPVLSSSDISLECI--EESMVEDKEMQSVIFSGSFDGPDEGITSLVHLISMEFLTL 168

Query: 27  RLVSG 13
           R V G
Sbjct: 169 RPVLG 173


>emb|CAN69425.1| hypothetical protein VITISV_043713 [Vitis vinifera]
          Length = 1111

 Score =  103 bits (257), Expect = 4e-20
 Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
 Frame = -3

Query: 546 MGRRKA-RPIRSEGILSDIGVADSTNSDEKLNNDGQLEAVNGNANEQVLESQKSFYINID 370
           MGRRK  +P RS G++  +   ++   +  LN+  Q E   G   ++V +++   ++ +D
Sbjct: 1   MGRRKQPKPHRSVGVVERLETQETAEGE--LNS--QQEHAQG---DEVGDAETPLFVEVD 53

Query: 369 RNHCDFDEHFDIAEIILNDVRFPVGDVVDRSSGDKVDPEFSLRFKLIGVEESSFRLGHWP 190
           R      EH DI+EI+LND+     ++ +   G  +    ++R  L G      RLGHWP
Sbjct: 54  RTGWGSGEHLDISEIVLNDL-----NLREEFHGYSLGFGSAMRTSLWG----RIRLGHWP 104

Query: 189 VLSADSIFLECIFLDNSTSEGGSKS-KVLLSGVFDGPDEGVSGLVHLVSQKLLTIRLVSG 13
           V++A SI LE  F++   SE G ++  V+LSG+FDGPDEGVSGLVHL   KLLT+R V G
Sbjct: 105 VVAASSISLE--FVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLKLLTLRPVLG 162

Query: 12  V 10
           V
Sbjct: 163 V 163