BLASTX nr result

ID: Dioscorea21_contig00031534 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00031534
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   149   2e-34
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...   117   7e-25
ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...   114   6e-24

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  149 bits (376), Expect = 2e-34
 Identities = 67/111 (60%), Positives = 88/111 (79%)
 Frame = -1

Query: 333 SASADALARLLIQHHNPFHAMESSLQLAGVGLTHDLVLQTLLRLKNASKVALGFFLWARD 154
           S  AD ++++L+QHHNPFHAMESSLQL G+ L+  LV QTLLRL+N SK+AL FFLWA+D
Sbjct: 50  SYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKD 109

Query: 153 HAHHLHNADAYDLMVDILGRVRQFDVVWQLIVEMDQRGVVPSPRTFAVLVR 1
            AHH H+  +Y+L++DIL +VRQFDV WQ I+EMDQ  + P+  TF +L+R
Sbjct: 110 QAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIR 160


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  149 bits (376), Expect = 2e-34
 Identities = 67/111 (60%), Positives = 88/111 (79%)
 Frame = -1

Query: 333 SASADALARLLIQHHNPFHAMESSLQLAGVGLTHDLVLQTLLRLKNASKVALGFFLWARD 154
           S  AD ++++L+QHHNPFHAMESSLQL G+ L+  LV QTLLRL+N SK+AL FFLWA+D
Sbjct: 50  SYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKD 109

Query: 153 HAHHLHNADAYDLMVDILGRVRQFDVVWQLIVEMDQRGVVPSPRTFAVLVR 1
            AHH H+  +Y+L++DIL +VRQFDV WQ I+EMDQ  + P+  TF +L+R
Sbjct: 110 QAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIR 160


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score =  117 bits (294), Expect = 7e-25
 Identities = 56/111 (50%), Positives = 79/111 (71%)
 Frame = -1

Query: 333 SASADALARLLIQHHNPFHAMESSLQLAGVGLTHDLVLQTLLRLKNASKVALGFFLWARD 154
           S  A+ ++ +L+ HHNPFHAMESSLQL G+ L+  L+ QTLLRL++ SK+AL FF ++  
Sbjct: 36  SNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFHYSLS 95

Query: 153 HAHHLHNADAYDLMVDILGRVRQFDVVWQLIVEMDQRGVVPSPRTFAVLVR 1
                 N   Y+L++DIL +VRQFDV WQLI++MDQ  + P+  TF +L+R
Sbjct: 96  LPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIR 146


>ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/111 (51%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
 Frame = -1

Query: 330 ASADALARLLIQHHNPFHAMESSLQLAGVGLTHDLVLQTLLRLKNASKVALGFFLWARDH 151
           + A+ +++LL+QHHNPFHA ES LQL G+ LT  L+  TLLRLKN SK+AL  F +A+  
Sbjct: 35  SDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHSKIALSLFHYAKTL 94

Query: 150 AHHLHNADAYDLMVDILGRVRQFDVVWQLIVEMDQR-GVVPSPRTFAVLVR 1
            +   +  ++ L++D + +VRQFDV WQLIVEMDQR  + P+P TF  L+R
Sbjct: 95  PNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIR 145


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  114 bits (286), Expect = 6e-24
 Identities = 67/137 (48%), Positives = 83/137 (60%), Gaps = 26/137 (18%)
 Frame = -1

Query: 333 SASADALARLLIQHHNPFHAMESSLQLAGVGLTHDLVLQTLLRLKNASKVALGFFLWARD 154
           S  AD L+++L+ HHNPFHAMESSLQL G+ LT  L+ QTLLRL++ SK+AL  F     
Sbjct: 54  SNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNSKIALSLF----- 108

Query: 153 HAHH-------------------LHNADA-------YDLMVDILGRVRQFDVVWQLIVEM 52
             HH                     +AD+       Y+LM+DIL +VRQFDV WQLIVEM
Sbjct: 109 --HHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCWQLIVEM 166

Query: 51  DQRGVVPSPRTFAVLVR 1
           DQR V P+  TF VL+R
Sbjct: 167 DQRNVKPTSETFFVLIR 183


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