BLASTX nr result
ID: Dioscorea21_contig00030872
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00030872
(262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ... 138 5e-31
emb|CBI38165.3| unnamed protein product [Vitis vinifera] 134 6e-30
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi... 134 6e-30
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi... 129 2e-28
ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi... 127 7e-28
>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 705
Score = 138 bits (347), Expect = 5e-31
Identities = 65/86 (75%), Positives = 77/86 (89%)
Frame = -1
Query: 259 RNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQI 80
RN +WNSLITCYEQNGPA +AL V+VRMM+CG+E DE+TLASVASACA+LSAIREGLQI
Sbjct: 215 RNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQI 274
Query: 79 HAQAIKFERFNNDLVLSNALVDMYAK 2
HA+ +K +++ NDLVL NALVDMYAK
Sbjct: 275 HARVMKHDKYRNDLVLGNALVDMYAK 300
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
ERN +WN+LI Y QNG EA+ +++ + + T ++ +ACA L+ ++ G Q
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406
Query: 82 IHAQAIKFERF-----NNDLVLSNALVDMYAK 2
H +K + ++D+ + N+L+DMY K
Sbjct: 407 AHTHILKHGFWFKSGEDSDIFVGNSLIDMYMK 438
>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 134 bits (338), Expect = 6e-30
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
ERN TWNSLITCYEQNGPA+EAL V+VRMMD G+E DEVTLASV SACA+L A++EGLQ
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 82 IHAQAIKFERFNNDLVLSNALVDMYAK 2
IHA+ +K +F +DLVL NALVDMYAK
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAK 296
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/87 (33%), Positives = 50/87 (57%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
E + +WNS+++ + Q+ E+L +V+M +E + S SACA L + G Q
Sbjct: 109 EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQ 168
Query: 82 IHAQAIKFERFNNDLVLSNALVDMYAK 2
+HA K R++ D+ + +AL+DMY+K
Sbjct: 169 VHALVSK-SRYSTDVYMGSALIDMYSK 194
>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 134 bits (338), Expect = 6e-30
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
ERN TWNSLITCYEQNGPA+EAL V+VRMMD G+E DEVTLASV SACA+L A++EGLQ
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 82 IHAQAIKFERFNNDLVLSNALVDMYAK 2
IHA+ +K +F +DLVL NALVDMYAK
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAK 296
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/87 (33%), Positives = 50/87 (57%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
E + +WNS+++ + Q+ E+L +V+M +E + S SACA L + G Q
Sbjct: 109 EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQ 168
Query: 82 IHAQAIKFERFNNDLVLSNALVDMYAK 2
+HA K R++ D+ + +AL+DMY+K
Sbjct: 169 VHALVSK-SRYSTDVYMGSALIDMYSK 194
Score = 54.7 bits (130), Expect = 8e-06
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
+RN +WN+LI Y QNG EAL ++ + + T ++ SACA L+ + G Q
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQ 402
Query: 82 IHAQAIK--FE---RFNNDLVLSNALVDMYAK 2
H +K FE +D+ + N+L+DMY K
Sbjct: 403 AHTHVLKQGFEFQSGAESDIFVGNSLIDMYMK 434
>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 129 bits (325), Expect = 2e-28
Identities = 63/86 (73%), Positives = 73/86 (84%)
Frame = -1
Query: 259 RNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQI 80
RN +WNSLITCYEQNGPA +AL V+V MMD GVE DE+TLASV SACA+ SAIREGLQI
Sbjct: 215 RNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQI 274
Query: 79 HAQAIKFERFNNDLVLSNALVDMYAK 2
HA+ +K +++ NDLVL NALVDMYAK
Sbjct: 275 HARVVKRDKYRNDLVLGNALVDMYAK 300
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
E+N +WN+LI Y QNG EA+ +++ + + T ++ +ACA L+ ++ G Q
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406
Query: 82 IHAQAIKFERF-----NNDLVLSNALVDMYAK 2
H Q +K + +D+ + N+L+DMY K
Sbjct: 407 AHTQILKHGFWFQSGEESDIFVGNSLIDMYMK 438
Score = 55.1 bits (131), Expect = 6e-06
Identities = 31/87 (35%), Positives = 50/87 (57%)
Frame = -1
Query: 262 ERNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQ 83
E + +WN++++ + Q+ EAL +V M +E + S SACA L+ + G+Q
Sbjct: 113 EPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQ 172
Query: 82 IHAQAIKFERFNNDLVLSNALVDMYAK 2
IHA I R+ D+ + +ALVDMY+K
Sbjct: 173 IHA-LISKSRYLLDVYMGSALVDMYSK 198
>ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 127 bits (320), Expect = 7e-28
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = -1
Query: 259 RNTTTWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQI 80
R+ +WNSLITCYEQNGP +EAL ++V M+ CGVE DEVTLASV SACAT+SAI+EG QI
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQI 274
Query: 79 HAQAIKFERFNNDLVLSNALVDMYAK 2
HA+ +K + F NDL+L NAL+DMYAK
Sbjct: 275 HARVVKCDEFRNDLILGNALLDMYAK 300
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = -1
Query: 247 TWNSLITCYEQNGPANEALVVYVRMMDCGVEFDEVTLASVASACATLSAIREGLQIHAQA 68
+WNS+I+ +EQ+G +EALV + +M G +E + S SACA L ++ G QIH+
Sbjct: 118 SWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV 177
Query: 67 IKFERFNNDLVLSNALVDMYAK 2
+ + +D+ + +ALVDMY+K
Sbjct: 178 YR-SNYLSDVYMGSALVDMYSK 198