BLASTX nr result

ID: Dioscorea21_contig00030391 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00030391
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor...   241   8e-62
emb|CBI36976.3| unnamed protein product [Vitis vinifera]              240   1e-61
ref|XP_002278247.1| PREDICTED: probable pre-mRNA-splicing factor...   240   1e-61
ref|XP_003554560.1| PREDICTED: probable pre-mRNA-splicing factor...   239   3e-61
ref|XP_003554559.1| PREDICTED: probable pre-mRNA-splicing factor...   239   3e-61

>ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like [Cucumis sativus]
            gi|449515243|ref|XP_004164659.1| PREDICTED: probable
            pre-mRNA-splicing factor ATP-dependent RNA helicase-like
            [Cucumis sativus]
          Length = 732

 Score =  241 bits (615), Expect = 8e-62
 Identities = 119/207 (57%), Positives = 149/207 (71%), Gaps = 1/207 (0%)
 Frame = -2

Query: 619  YTKK-FLEACQPHASPEILRANXXXXXXXXXXXGISDMLHFDFINPPAVDMMTSAIETLN 443
            YT+K F    QP   PEILR+N           GI D++HFDF++PPA + +  A+E LN
Sbjct: 419  YTEKSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 478

Query: 442  CLGALDGDGNLTSIGELMSEFPLDPHMSKMILCSPEFKCSAEILSITSMLSVPHCFFQPR 263
             LGALD DGNLT +GE+MSEFPLDP MSKM++ SPEFKCS EILS+++MLSVP+CF +PR
Sbjct: 479  YLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFKCSNEILSVSAMLSVPNCFVRPR 538

Query: 262  EKHHDADEAKAKFSHAKGDHLTLLTLYQAYKKHNGSSAWCEENYVNEAALKSADNARFHL 83
            E    ADEAKA+F H  GDHLTLL +Y AYK++N   +WC EN++N  A+K+ADN R  L
Sbjct: 539  EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRAMKAADNVREQL 598

Query: 82   ESIMRRLNIKLCSTDPSNCDYDNNIRK 2
              IM R N+KLCSTD +N +Y  NIRK
Sbjct: 599  VRIMSRFNLKLCSTDFNNREYYVNIRK 625


>emb|CBI36976.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  240 bits (613), Expect = 1e-61
 Identities = 121/207 (58%), Positives = 149/207 (71%), Gaps = 1/207 (0%)
 Frame = -2

Query: 619 YTKK-FLEACQPHASPEILRANXXXXXXXXXXXGISDMLHFDFINPPAVDMMTSAIETLN 443
           YT+K F    QP   PEILR+N           GI D++HFDF++PPA + +  A+E LN
Sbjct: 374 YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 433

Query: 442 CLGALDGDGNLTSIGELMSEFPLDPHMSKMILCSPEFKCSAEILSITSMLSVPHCFFQPR 263
            LGALD DGNLT +GE+MSEFPLDP MSKM++ SPEF CS EILSI++MLSVP+CF +PR
Sbjct: 434 YLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPR 493

Query: 262 EKHHDADEAKAKFSHAKGDHLTLLTLYQAYKKHNGSSAWCEENYVNEAALKSADNARFHL 83
           E    ADEAKA+F H  GDHLTLL +Y AYK++N   +WC EN+VN+ ALK+ADN R  L
Sbjct: 494 EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQL 553

Query: 82  ESIMRRLNIKLCSTDPSNCDYDNNIRK 2
             IM R N+KLCSTD ++ DY  NIRK
Sbjct: 554 VRIMARFNLKLCSTDFNSRDYYINIRK 580


>ref|XP_002278247.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase [Vitis vinifera] gi|147787427|emb|CAN64445.1|
            hypothetical protein VITISV_036050 [Vitis vinifera]
          Length = 728

 Score =  240 bits (613), Expect = 1e-61
 Identities = 121/207 (58%), Positives = 149/207 (71%), Gaps = 1/207 (0%)
 Frame = -2

Query: 619  YTKK-FLEACQPHASPEILRANXXXXXXXXXXXGISDMLHFDFINPPAVDMMTSAIETLN 443
            YT+K F    QP   PEILR+N           GI D++HFDF++PPA + +  A+E LN
Sbjct: 415  YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 474

Query: 442  CLGALDGDGNLTSIGELMSEFPLDPHMSKMILCSPEFKCSAEILSITSMLSVPHCFFQPR 263
             LGALD DGNLT +GE+MSEFPLDP MSKM++ SPEF CS EILSI++MLSVP+CF +PR
Sbjct: 475  YLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPR 534

Query: 262  EKHHDADEAKAKFSHAKGDHLTLLTLYQAYKKHNGSSAWCEENYVNEAALKSADNARFHL 83
            E    ADEAKA+F H  GDHLTLL +Y AYK++N   +WC EN+VN+ ALK+ADN R  L
Sbjct: 535  EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQL 594

Query: 82   ESIMRRLNIKLCSTDPSNCDYDNNIRK 2
              IM R N+KLCSTD ++ DY  NIRK
Sbjct: 595  VRIMARFNLKLCSTDFNSRDYYINIRK 621


>ref|XP_003554560.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like isoform 2 [Glycine max]
          Length = 713

 Score =  239 bits (610), Expect = 3e-61
 Identities = 120/207 (57%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
 Frame = -2

Query: 619  YTKK-FLEACQPHASPEILRANXXXXXXXXXXXGISDMLHFDFINPPAVDMMTSAIETLN 443
            YT+K F    QP   PEILR+N           GI D++HFDF++PPA + +  A+E LN
Sbjct: 400  YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 459

Query: 442  CLGALDGDGNLTSIGELMSEFPLDPHMSKMILCSPEFKCSAEILSITSMLSVPHCFFQPR 263
             LGALD DGNLT +GE+MSEFPLDP MSKM++ SPEF CS EILS+++MLSVP+CF +PR
Sbjct: 460  YLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPR 519

Query: 262  EKHHDADEAKAKFSHAKGDHLTLLTLYQAYKKHNGSSAWCEENYVNEAALKSADNARFHL 83
            E    ADEAKA+F H  GDHLTLL +Y AYK++N   +WC +N+VN  ALKSADN R  L
Sbjct: 520  EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQL 579

Query: 82   ESIMRRLNIKLCSTDPSNCDYDNNIRK 2
              IM R N+KLCSTD ++ DY  NIRK
Sbjct: 580  VRIMSRFNLKLCSTDFNSRDYYVNIRK 606


>ref|XP_003554559.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like isoform 1 [Glycine max]
          Length = 721

 Score =  239 bits (610), Expect = 3e-61
 Identities = 120/207 (57%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
 Frame = -2

Query: 619  YTKK-FLEACQPHASPEILRANXXXXXXXXXXXGISDMLHFDFINPPAVDMMTSAIETLN 443
            YT+K F    QP   PEILR+N           GI D++HFDF++PPA + +  A+E LN
Sbjct: 408  YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 467

Query: 442  CLGALDGDGNLTSIGELMSEFPLDPHMSKMILCSPEFKCSAEILSITSMLSVPHCFFQPR 263
             LGALD DGNLT +GE+MSEFPLDP MSKM++ SPEF CS EILS+++MLSVP+CF +PR
Sbjct: 468  YLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPR 527

Query: 262  EKHHDADEAKAKFSHAKGDHLTLLTLYQAYKKHNGSSAWCEENYVNEAALKSADNARFHL 83
            E    ADEAKA+F H  GDHLTLL +Y AYK++N   +WC +N+VN  ALKSADN R  L
Sbjct: 528  EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQL 587

Query: 82   ESIMRRLNIKLCSTDPSNCDYDNNIRK 2
              IM R N+KLCSTD ++ DY  NIRK
Sbjct: 588  VRIMSRFNLKLCSTDFNSRDYYVNIRK 614


Top