BLASTX nr result

ID: Dioscorea21_contig00030317 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00030317
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g...    86   3e-15
dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]     82   6e-14
ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [...    81   1e-13
tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea m...    75   6e-12
ref|NP_001146029.1| hypothetical protein [Zea mays] gi|219885375...    75   6e-12

>ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
           gi|297735779|emb|CBI18466.3| unnamed protein product
           [Vitis vinifera]
          Length = 704

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/86 (50%), Positives = 57/86 (66%)
 Frame = -1

Query: 321 RLLVPNGQXXXXXXXXXXXXXXXKTESGAQIRILGHEQVPACAAAGDELIHISGSFSAVK 142
           RLL P+ Q               + ESGAQIR+L  + +PACA+ GDELI I+G+F AV+
Sbjct: 186 RLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQITGTFPAVR 245

Query: 141 KALLAVSNCLQDHPRVEASSPAIGKP 64
           KALL VS+CLQD+PR +A++ A  KP
Sbjct: 246 KALLLVSSCLQDNPRADATNSAAAKP 271


>dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 627

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 45/87 (51%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = -1

Query: 321 RLLVPNGQXXXXXXXXXXXXXXXKTESGAQIRIL-GHEQVPACAAAGDELIHISGSFSAV 145
           R+L   GQ               + ESGAQIR+    EQVP CA  GDELIHISGSFSA 
Sbjct: 113 RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGSFSAA 172

Query: 144 KKALLAVSNCLQDHPRVEASSPAIGKP 64
           +KALL VS CLQD+PR + S+   G+P
Sbjct: 173 RKALLLVSTCLQDNPRPDTSNFPSGRP 199


>ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
           distachyon]
          Length = 629

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = -1

Query: 321 RLLVPNGQXXXXXXXXXXXXXXXKTESGAQIRILGH-EQVPACAAAGDELIHISGSFSAV 145
           R+L   GQ               + ESGAQIR+  + +QVP CA  GDELIHISGSFSA 
Sbjct: 115 RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKDQVPPCALQGDELIHISGSFSAA 174

Query: 144 KKALLAVSNCLQDHPRVEASSPAIGK 67
           +KALL VS CLQD+PR+E S+ + G+
Sbjct: 175 RKALLLVSTCLQDNPRLETSNFSTGR 200


>tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
          Length = 640

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = -1

Query: 246 ESGAQIRIL-GHEQVPACAAAGDELIHISGSFSAVKKALLAVSNCLQDHPRVEASSPAIG 70
           E GAQIR+    EQ+P  A  GDELIHISGSFS V+KALLAVS CLQD+PR +  +  IG
Sbjct: 137 ECGAQIRVFRNREQLPPWAPPGDELIHISGSFSQVRKALLAVSTCLQDNPRPDTHNIPIG 196

Query: 69  KP 64
           +P
Sbjct: 197 RP 198


>ref|NP_001146029.1| hypothetical protein [Zea mays] gi|219885375|gb|ACL53062.1| unknown
           [Zea mays] gi|414589866|tpg|DAA40437.1| TPA:
           hypothetical protein ZEAMMB73_485730 [Zea mays]
          Length = 624

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = -1

Query: 246 ESGAQIRIL-GHEQVPACAAAGDELIHISGSFSAVKKALLAVSNCLQDHPRVEASSPAIG 70
           E GAQIR+    EQ+P  A  GDELIHISGSFS V+KALLAVS CLQD+PR +  +  IG
Sbjct: 137 ECGAQIRVFRNREQLPPWAPPGDELIHISGSFSQVRKALLAVSTCLQDNPRPDTHNIPIG 196

Query: 69  KP 64
           +P
Sbjct: 197 RP 198


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