BLASTX nr result

ID: Dioscorea21_contig00030219 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00030219
         (661 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002876741.1| hypothetical protein ARALYDRAFT_904322 [Arab...   107   2e-21
ref|NP_178239.1| uncharacterized protein [Arabidopsis thaliana] ...   106   3e-21
gb|AAM61459.1| unknown [Arabidopsis thaliana]                         106   5e-21
ref|XP_002890083.1| hypothetical protein ARALYDRAFT_471689 [Arab...   102   8e-20
ref|XP_002312430.1| predicted protein [Populus trichocarpa] gi|2...   102   8e-20

>ref|XP_002876741.1| hypothetical protein ARALYDRAFT_904322 [Arabidopsis lyrata subsp.
           lyrata] gi|297322579|gb|EFH53000.1| hypothetical protein
           ARALYDRAFT_904322 [Arabidopsis lyrata subsp. lyrata]
          Length = 154

 Score =  107 bits (268), Expect = 2e-21
 Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 8/96 (8%)
 Frame = -2

Query: 558 RYHRLKTHRKTVFASKKNS-----GDYGSDHSKG---IVDENMIVLRKRMHEMKMAERNY 403
           R+H L   ++T  + KK +        G DH  G   +VDENMIVLRKR+HEMKM ERNY
Sbjct: 16  RFHPLVLSQRTTTSQKKKTMTMSVSASGKDHYYGGGRLVDENMIVLRKRIHEMKMVERNY 75

Query: 402 EPPENWMEWEKRYYTRYESDVCVAVGFLQTFLMNNR 295
           EPP +WM+WEKR+Y+ Y+S +C +VG LQ+FLMN+R
Sbjct: 76  EPPSHWMDWEKRFYSSYDSVICDSVGLLQSFLMNSR 111


>ref|NP_178239.1| uncharacterized protein [Arabidopsis thaliana]
           gi|4262237|gb|AAD14530.1| predicted by genscan and
           genefinder [Arabidopsis thaliana]
           gi|17529142|gb|AAL38797.1| unknown protein [Arabidopsis
           thaliana] gi|21436241|gb|AAM51259.1| unknown protein
           [Arabidopsis thaliana] gi|49660101|gb|AAT68341.1|
           hypothetical protein At2g01300 [Arabidopsis thaliana]
           gi|60547691|gb|AAX23809.1| hypothetical protein
           At2g01300 [Arabidopsis thaliana]
           gi|330250336|gb|AEC05430.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 156

 Score =  106 bits (265), Expect = 3e-21
 Identities = 51/98 (52%), Positives = 66/98 (67%), Gaps = 10/98 (10%)
 Frame = -2

Query: 558 RYHRLKTHRKTVFASKKN-------SGDYGSDHSKG---IVDENMIVLRKRMHEMKMAER 409
           R+H L   ++ +   KK        +   G DH  G   +VDENMIVLRKR+HEMKM ER
Sbjct: 16  RFHPLVLSQRAIIPKKKKMTMRVSAAASSGKDHYYGGGRLVDENMIVLRKRIHEMKMVER 75

Query: 408 NYEPPENWMEWEKRYYTRYESDVCVAVGFLQTFLMNNR 295
           NYEPP +WM+WEKR+Y  Y+S +C +VG LQ+FLMN+R
Sbjct: 76  NYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSR 113


>gb|AAM61459.1| unknown [Arabidopsis thaliana]
          Length = 156

 Score =  106 bits (264), Expect = 5e-21
 Identities = 51/98 (52%), Positives = 66/98 (67%), Gaps = 10/98 (10%)
 Frame = -2

Query: 558 RYHRLKTHRKTVFASKKN-------SGDYGSDHSKG---IVDENMIVLRKRMHEMKMAER 409
           R+H L   ++ +   KK        +   G DH  G   +VDENMIVLRKR+HEMKM ER
Sbjct: 16  RFHPLVLSQRAIIPKKKKMTMRVSAAASSGKDHYCGGGRLVDENMIVLRKRIHEMKMVER 75

Query: 408 NYEPPENWMEWEKRYYTRYESDVCVAVGFLQTFLMNNR 295
           NYEPP +WM+WEKR+Y  Y+S +C +VG LQ+FLMN+R
Sbjct: 76  NYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSR 113


>ref|XP_002890083.1| hypothetical protein ARALYDRAFT_471689 [Arabidopsis lyrata subsp.
           lyrata] gi|297335925|gb|EFH66342.1| hypothetical protein
           ARALYDRAFT_471689 [Arabidopsis lyrata subsp. lyrata]
          Length = 143

 Score =  102 bits (253), Expect = 8e-20
 Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 3/91 (3%)
 Frame = -2

Query: 558 RYHRLKTHRKTVFASKKN-SGDYGSDHSKG--IVDENMIVLRKRMHEMKMAERNYEPPEN 388
           R+H L+T +K    +K+  +    +D+ +G   VDENM+VLRKR+HEMKM ERNYEPP +
Sbjct: 13  RFHPLRTSQKIATGTKRRRTTTVCADYYRGGRTVDENMVVLRKRIHEMKMVERNYEPPSH 72

Query: 387 WMEWEKRYYTRYESDVCVAVGFLQTFLMNNR 295
           WM+WEKR Y  Y++ +C A+  LQTFLMN+R
Sbjct: 73  WMQWEKRLYCDYDATICDALSLLQTFLMNSR 103


>ref|XP_002312430.1| predicted protein [Populus trichocarpa] gi|222852250|gb|EEE89797.1|
           predicted protein [Populus trichocarpa]
          Length = 150

 Score =  102 bits (253), Expect = 8e-20
 Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 10/97 (10%)
 Frame = -2

Query: 555 YHRLKTHRKTVFASKKN-----SGDYGSDHSKG-----IVDENMIVLRKRMHEMKMAERN 406
           YH L    KT   S+K      S      H +      IVDENMIVLRKR+HEMKM ERN
Sbjct: 13  YHPLFASSKTKLDSRKRVSARISASRRESHDQNYFSGRIVDENMIVLRKRIHEMKMVERN 72

Query: 405 YEPPENWMEWEKRYYTRYESDVCVAVGFLQTFLMNNR 295
           YEPP NWMEWEKRY+T Y+S +C  +GFLQ+ LM+ R
Sbjct: 73  YEPPANWMEWEKRYFTSYDSLICEMMGFLQSQLMDTR 109


Top