BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00029926
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525999.1| pentatricopeptide repeat-containing protein,...    93   3e-17
ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002876773.1| pentatricopeptide repeat-containing protein ...    88   6e-16
ref|NP_178283.1| pentatricopeptide repeat-containing protein [Ar...    85   5e-15
ref|XP_002320961.1| predicted protein [Populus trichocarpa] gi|2...    81   1e-13

>ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534731|gb|EEF36423.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 557

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 41/89 (46%), Positives = 59/89 (66%)
 Frame = -1

Query: 270 DPVTFNTIIAALCRQSLRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKVFI 91
           D V+FN +    C++ ++     ++G M K C PNV+TY T ID  CK+GDLDT +K F 
Sbjct: 41  DLVSFNALFNGFCKRKMKEEVFIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFK 100

Query: 90  DMRFENGVLPNAVTFTCLIDGFCKNDRLD 4
           +MR ++G++PN + FTCLIDG+ K   LD
Sbjct: 101 EMR-KDGIVPNLIAFTCLIDGYSKIGNLD 128


>ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
           gi|449521427|ref|XP_004167731.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
          Length = 585

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 40/90 (44%), Positives = 58/90 (64%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQSLRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKVF 94
           PD V FN +     +  ++  A  + G M KYC P++VTY T +DMFCKMGD+   +++F
Sbjct: 125 PDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRMF 184

Query: 93  IDMRFENGVLPNAVTFTCLIDGFCKNDRLD 4
           +DM  + G++PN V F+ LIDG+CK   LD
Sbjct: 185 LDM-MKVGIVPNLVVFSSLIDGYCKAGSLD 213



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQS-LRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKV 97
           P  VT+ T +   C+   +++    FL  M     PN+V +S+LID +CK G LD A + 
Sbjct: 159 PSIVTYGTFVDMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEY 218

Query: 96  FIDMRFENGVLPNAVTFTCLIDGFCKNDRL 7
           F  M+ E  V PN  T++ LIDG  K+  L
Sbjct: 219 FERMK-ECSVRPNEFTYSTLIDGCSKHGML 247


>ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322611|gb|EFH53032.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 559

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQSLRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKVF 94
           PD V+FNT+     +  +      ++G M K C PNVVTYST IDMFCK G+L  A K F
Sbjct: 127 PDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDMFCKSGELKLALKSF 186

Query: 93  IDMRFENGVLPNAVTFTCLIDGFCKNDRLD 4
             M+  + + PN VTFTCLIDG+CK   L+
Sbjct: 187 NCMK-RDALFPNVVTFTCLIDGYCKAGDLE 215



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQS-LRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKV 97
           P+ VT++T I   C+   L+L    F         PNVVT++ LID +CK GDL+    +
Sbjct: 161 PNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSL 220

Query: 96  FIDMRFENGVLPNAVTFTCLIDGFCKNDRL 7
           + +MR     L N VT+T LIDGFCK   +
Sbjct: 221 YEEMRRVRMSL-NVVTYTALIDGFCKKGEM 249



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
 Frame = -1

Query: 288 SLGLHPDPVTFNTIIAALCRQSLRLPALCFLGAMHKY-CKPNVVTYSTLIDMFCKMGDLD 112
           S G  P   +FN++++ +C+      A+  + +M ++ C+P+V++Y++LID  C+ GD+ 
Sbjct: 49  SRGYAPHRSSFNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIR 108

Query: 111 TAHKVFIDMRFENGVL--PNAVTFTCLIDGFCKNDRLDE 1
           +A  V   +R   G    P+ V+F  L +GF K   LDE
Sbjct: 109 SACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDE 147


>ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01740 gi|4220475|gb|AAD12698.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250397|gb|AEC05491.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/90 (46%), Positives = 55/90 (61%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQSLRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKVF 94
           PD V+FN++     +  +      ++G M K C PNVVTYST ID FCK G+L  A K F
Sbjct: 127 PDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSF 186

Query: 93  IDMRFENGVLPNAVTFTCLIDGFCKNDRLD 4
             M+  + + PN VTFTCLIDG+CK   L+
Sbjct: 187 HSMK-RDALSPNVVTFTCLIDGYCKAGDLE 215



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = -1

Query: 273 PDPVTFNTIIAALCRQS-LRLPALCFLGAMHKYCKPNVVTYSTLIDMFCKMGDLDTAHKV 97
           P+ VT++T I   C+   L+L    F         PNVVT++ LID +CK GDL+ A  +
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220

Query: 96  FIDMRFENGVLPNAVTFTCLIDGFCKNDRL 7
           + +MR     L N VT+T LIDGFCK   +
Sbjct: 221 YKEMRRVRMSL-NVVTYTALIDGFCKKGEM 249



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
 Frame = -1

Query: 288 SLGLHPDPVTFNTIIAALCRQSLRLPALCFLGAMHKY-CKPNVVTYSTLIDMFCKMGDLD 112
           S G  P   +FN++++ +C+      A   + +M ++ C+P+V++Y++LID  C+ GD+ 
Sbjct: 49  SRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIR 108

Query: 111 TAHKVFIDMRFENGVL--PNAVTFTCLIDGFCKNDRLDE 1
           +A  V   +R  +G +  P+ V+F  L +GF K   LDE
Sbjct: 109 SASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDE 147



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = -1

Query: 279 LHPDPVTFNTIIAALCRQSLRLPALCFLGAMHKY-CKPNVVTYSTLIDMFCKMGDLDTAH 103
           L P+ VTF  +I   C+      A+     M +     NVVTY+ LID FCK G++  A 
Sbjct: 194 LSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAE 253

Query: 102 KVFIDMRFENGVLPNAVTFTCLIDGF 25
           +++  M  E+ V PN++ +T +IDGF
Sbjct: 254 EMYSRM-VEDRVEPNSLVYTTIIDGF 278


>ref|XP_002320961.1| predicted protein [Populus trichocarpa] gi|222861734|gb|EEE99276.1|
           predicted protein [Populus trichocarpa]
          Length = 474

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = -1

Query: 282 GLHPDPVTFNTIIAALCRQSLRLPALCFLGAMHKY-CKPNVVTYSTLIDMFCKMGDLDTA 106
           GL P+  T+N II +L +      AL FL  M K  C PNVV YSTLID +C  G +D A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 105 HKVFIDMRFENGVLPNAVTFTCLIDGFCKNDRLDE 1
             VF D+    G  PN  T+T L++G+CK +R++E
Sbjct: 222 RSVF-DLMVSKGCTPNVYTYTSLMNGYCKIERIEE 255



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
 Frame = -1

Query: 282 GLHPDPVTFNTIIAALCRQSLRLPA------LCFLGAMHKYCKPNVVTYSTLIDMFCKMG 121
           GL PD VTF TII+ LCR    L A      +C  G       PN++TY  L+D  CK G
Sbjct: 267 GLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHT-----PNIMTYGVLLDGLCKHG 321

Query: 120 DLDTAHKVFIDMRFENGVLPNAVTFTCLIDGFCKNDRLDE 1
           +L+ A  +F +M+  + V PN V +T LID  CK  ++ +
Sbjct: 322 NLEEAFALFQEMQ-RSTVKPNLVIYTILIDSLCKCGKIKD 360



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
 Frame = -1

Query: 285 LGLHPDPVTFNTIIAALCRQSLRLPALCFLGAM-HKYCKPNVVTYSTLIDMFCKMGDLDT 109
           +G  P+ V ++T+I   C +     A      M  K C PNV TY++L++ +CK+  ++ 
Sbjct: 196 VGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEE 255

Query: 108 AHKVFIDMRFENGVLPNAVTFTCLIDGFCKNDR 10
           A ++ +D     G++P+ VTFT +I G C+  R
Sbjct: 256 AVQL-LDETLRKGLVPDIVTFTTIISGLCRAGR 287