BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00029709
         (640 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...    63   4e-08
dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]      60   5e-07
dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha] gi|459351...    59   6e-07
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...    59   8e-07
dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis ...    59   8e-07

>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 389

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = -1

Query: 97  QEGSIGLLKGVQKFDAKRGNKLSTYVYWWIKQ 2
           QEGSIGLL+G ++FD KRGNKLSTYVYWWIK+
Sbjct: 207 QEGSIGLLRGAERFDPKRGNKLSTYVYWWIKE 238


>dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]
          Length = 269

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = -1

Query: 97  QEGSIGLLKGVQKFDAKRGNKLSTYVYWWIKQ 2
           QEGSIGLL+G ++FD +RG KLSTYVYWWIKQ
Sbjct: 212 QEGSIGLLRGAERFDPERGYKLSTYVYWWIKQ 243


>dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha] gi|459351504|dbj|BAM95330.1|
           plastid RNA polymerase sigma factor 1 [Marchantia
           polymorpha]
          Length = 574

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = -1

Query: 97  QEGSIGLLKGVQKFDAKRGNKLSTYVYWWIKQ 2
           QEGSIGLLKGV+KFD  RG KLSTYV+WWI+Q
Sbjct: 358 QEGSIGLLKGVEKFDHTRGYKLSTYVHWWIRQ 389


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score = 58.9 bits (141), Expect = 8e-07
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = -1

Query: 97  QEGSIGLLKGVQKFDAKRGNKLSTYVYWWIKQ 2
           QEGSIGLL+G ++FD  RG KLSTYVYWWIKQ
Sbjct: 210 QEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQ 241


>dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis thaliana]
           gi|16649075|gb|AAL24389.1| sigma-like factor
           [Arabidopsis thaliana] gi|21387209|gb|AAM48008.1|
           sigma-like factor [Arabidopsis thaliana]
          Length = 267

 Score = 58.9 bits (141), Expect = 8e-07
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = -1

Query: 97  QEGSIGLLKGVQKFDAKRGNKLSTYVYWWIKQ 2
           QEGSIGLL+G ++FD  RG KLSTYVYWWIKQ
Sbjct: 210 QEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQ 241