BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028971
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   198   4e-49
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   178   5e-43
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   164   7e-39
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   162   3e-38
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   160   1e-37

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  198 bits (503), Expect = 4e-49
 Identities = 96/131 (73%), Positives = 113/131 (86%)
 Frame = -3

Query: 477 VLNGLNQNLSSTKYQFGKNSQESVLDRLPRKIKDDLLNHWSTIQELLRHFWSSYPITTEH 298
           VLNGL QN+SSTK+  GKN QESVLDRLP   K++LL+HW++IQELLRHFWSSYPITT +
Sbjct: 472 VLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTY 531

Query: 297 LSKKVGRLKDAMTEIYVKLQEIKESVQGDFRHQVSLLVQPMVQALDAAFAYHDNEQQKRV 118
           L  K  RLKDAM++IY KLQEIKESVQ DFRHQVSLLVQPM+QALDAAFA++D +QQKR 
Sbjct: 532 LYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRS 591

Query: 117 SKGGVKPNGFV 85
           ++ G +PNGFV
Sbjct: 592 ARSGERPNGFV 602


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  178 bits (451), Expect = 5e-43
 Identities = 86/130 (66%), Positives = 104/130 (80%)
 Frame = -3

Query: 477 VLNGLNQNLSSTKYQFGKNSQESVLDRLPRKIKDDLLNHWSTIQELLRHFWSSYPITTEH 298
           V NGL QN+SSTKYQ GKN QES+L+ LP   K++LL+HW +IQELL+HFWSSYPITT +
Sbjct: 599 VYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSY 658

Query: 297 LSKKVGRLKDAMTEIYVKLQEIKESVQGDFRHQVSLLVQPMVQALDAAFAYHDNEQQKRV 118
           L  KV RLKDAM +IY +L+EIKE+V  DFRHQVSLLV+PM QALDAAF +HD + QKR 
Sbjct: 659 LYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRS 718

Query: 117 SKGGVKPNGF 88
            K G + NG+
Sbjct: 719 VKSGERLNGY 728


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  164 bits (415), Expect = 7e-39
 Identities = 79/132 (59%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
 Frame = -3

Query: 477 VLNGLNQNLSSTKYQFGKNSQESVLDRLPRKIKDDLLNHWSTIQELLRHFWSSYPITTEH 298
           V + L + +S+ K   GKN +ES LDRLP+  KD++L+HW++IQELLRHFWSSYPITT +
Sbjct: 461 VFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTY 520

Query: 297 LSKKVGRLKDAMTEIYVKLQEIKESVQGDFRHQVSLLVQPMVQALDAAFAYHDNEQQKRV 118
           L  KVG+LKDAM+  Y KL+ +KESVQ D RHQVSLLV+PM QALDAAF +++ + Q+R 
Sbjct: 521 LHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRT 580

Query: 117 SK-GGVKPNGFV 85
           +K GG +PNG+V
Sbjct: 581 AKSGGERPNGYV 592


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
           thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| transcription initiation
           factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  162 bits (410), Expect = 3e-38
 Identities = 76/131 (58%), Positives = 103/131 (78%)
 Frame = -3

Query: 477 VLNGLNQNLSSTKYQFGKNSQESVLDRLPRKIKDDLLNHWSTIQELLRHFWSSYPITTEH 298
           V + L + +++ K   GKN +ES LDRLP+  KD++L+HW++IQELL+HFWSSYPITT +
Sbjct: 461 VFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTY 520

Query: 297 LSKKVGRLKDAMTEIYVKLQEIKESVQGDFRHQVSLLVQPMVQALDAAFAYHDNEQQKRV 118
           L  KVG+LKDAM+  Y KL+ +KESVQ D RHQVSLLV+PM QALDAAF +++ + Q+R 
Sbjct: 521 LHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRT 580

Query: 117 SKGGVKPNGFV 85
           +K G +PNG+V
Sbjct: 581 AKSGERPNGYV 591


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  160 bits (405), Expect = 1e-37
 Identities = 78/103 (75%), Positives = 89/103 (86%)
 Frame = -3

Query: 477 VLNGLNQNLSSTKYQFGKNSQESVLDRLPRKIKDDLLNHWSTIQELLRHFWSSYPITTEH 298
           VLNGL QN+SSTK+  GKN QESVLDRLP   K++LL+HW++IQELLRHFWSSYPITT +
Sbjct: 515 VLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTY 574

Query: 297 LSKKVGRLKDAMTEIYVKLQEIKESVQGDFRHQVSLLVQPMVQ 169
           L  K  RLKDAM++IY KLQEIKESVQ DFRHQVSLLVQPM+Q
Sbjct: 575 LYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQ 617