BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028935
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    96   2e-18
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    92   6e-17
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    88   6e-16
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    87   1e-15
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    87   1e-15

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 56/153 (36%), Positives = 81/153 (52%)
 Frame = -2

Query: 459 LSALHRQNSIRMAQRARLMWINCGDSNSALFHNSVRFRNHYNNISHITDSTGNLFLDYEN 280
           L A +RQ  +   Q +R+ W+N GD N   FH + R R   NN+S I D +G  F + E 
Sbjct: 266 LEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQ 325

Query: 279 ISKVFVKFFSDIWEEKAEHNLQDLISALPNDLPQVSEQDGELLIKEVTKNEIYQALQSLP 100
           I+     +F +I+      +LQ +  AL    P +S    E LIK  +  EI +AL S+ 
Sbjct: 326 IASTISSYFQNIFTTSNNSDLQVVQEALS---PIISSHCNEELIKISSLLEIKEALFSIS 382

Query: 99  SGKSPGPDGFNAEFYRFYWKEIGDHLTMAIRFF 1
           + K+PGPDGF+A F+  YW  I   ++  IR F
Sbjct: 383 ADKAPGPDGFSASFFHAYWDIIEADVSRDIRSF 415


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 42/151 (27%), Positives = 78/151 (51%)
 Frame = -2

Query: 462 RLSALHRQNSIRMAQRARLMWINCGDSNSALFHNSVRFRNHYNNISHITDSTGNLFLDYE 283
           R+  L ++  +   QR+R  WI  GD N+  FH     R   NN+  I +  G  F D +
Sbjct: 333 RMDELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVRRIRNEAGEWFEDED 392

Query: 282 NISKVFVKFFSDIWEEKAEHNLQDLISALPNDLPQVSEQDGELLIKEVTKNEIYQALQSL 103
           ++++ F  +F ++++      +  +++ +    PQ++++ G  L     + E+  AL  +
Sbjct: 393 DVTECFAHYFENLFQSGNNCEMDPILNIVK---PQITDELGTQLDAPFRREEVSAALAQM 449

Query: 102 PSGKSPGPDGFNAEFYRFYWKEIGDHLTMAI 10
              K+PGPDG NA FY+ +W  IG+ +T  +
Sbjct: 450 HPNKAPGPDGMNALFYQHFWDTIGEDVTTKV 480


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 13/155 (8%)
 Frame = -2

Query: 426 MAQRARLMWINCGDSNSALFHNSVRFRNHYNNISHITDSTGNLFLDYENISKVFVKFFSD 247
           + QR++L W++ GD N+  FH +V  R   N+I  I    G++    E I          
Sbjct: 245 LKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKI---------- 294

Query: 246 IWEEKAEHNLQDLISALPNDLPQV-------------SEQDGELLIKEVTKNEIYQALQS 106
             + +AEH+ ++ +  +PND   +             S+ D E+L   V+  EI++ + S
Sbjct: 295 --KTEAEHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFS 352

Query: 105 LPSGKSPGPDGFNAEFYRFYWKEIGDHLTMAIRFF 1
           +P+ KSPGPDG+ AEFY+  W  IG    +AI+ F
Sbjct: 353 MPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSF 387


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/158 (29%), Positives = 83/158 (52%)
 Frame = -2

Query: 474 ILYNRLSALHRQNSIRMAQRARLMWINCGDSNSALFHNSVRFRNHYNNISHITDSTGNLF 295
           ++  +L  L  +  I   QR+R+ W+  GD N+A FH     R   N I  +    G+  
Sbjct: 336 LIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRC 395

Query: 294 LDYENISKVFVKFFSDIWEEKAEHNLQDLISALPNDLPQVSEQDGELLIKEVTKNEIYQA 115
           +  E I ++   F+ +++  +   ++++++ A+PN   +V +     L K+ T  EI  A
Sbjct: 396 ISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPN---KVGDFINGELGKQYTNEEIKTA 452

Query: 114 LQSLPSGKSPGPDGFNAEFYRFYWKEIGDHLTMAIRFF 1
           L  + S K+PGPDGF A FY+ +W  + +H+  A+R F
Sbjct: 453 LFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGF 490


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/158 (29%), Positives = 83/158 (52%)
 Frame = -2

Query: 474 ILYNRLSALHRQNSIRMAQRARLMWINCGDSNSALFHNSVRFRNHYNNISHITDSTGNLF 295
           ++  +L  L  +  I   QR+R+ W+  GD N+A FH     R   N I  +    G+  
Sbjct: 293 LIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRC 352

Query: 294 LDYENISKVFVKFFSDIWEEKAEHNLQDLISALPNDLPQVSEQDGELLIKEVTKNEIYQA 115
           +  E I ++   F+ +++  +   ++++++ A+PN   +V +     L K+ T  EI  A
Sbjct: 353 ISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPN---KVGDFINGELGKQYTNEEIKTA 409

Query: 114 LQSLPSGKSPGPDGFNAEFYRFYWKEIGDHLTMAIRFF 1
           L  + S K+PGPDGF A FY+ +W  + +H+  A+R F
Sbjct: 410 LFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGF 447