BLASTX nr result

ID: Dioscorea21_contig00028906 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028906
         (1050 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-l...   228   2e-57
gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]             216   6e-54
ref|XP_002310906.1| high mobility group family [Populus trichoca...   211   3e-52
ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-l...   197   3e-48
ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus...   196   1e-47

>ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
           gi|147815109|emb|CAN61363.1| hypothetical protein
           VITISV_034306 [Vitis vinifera]
           gi|297742725|emb|CBI35359.3| unnamed protein product
           [Vitis vinifera]
          Length = 190

 Score =  228 bits (580), Expect = 2e-57
 Identities = 116/154 (75%), Positives = 126/154 (81%)
 Frame = -1

Query: 807 KRVEAETTSSLKRARDGSAFTRCEGCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVEKATE 628
           KRVEAET SSLKRARDGSAF RCE C KDVPVVLIDMHSCSL++KI++NLEAQVVEK T+
Sbjct: 8   KRVEAET-SSLKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQVVEKVTD 66

Query: 627 VVKKPTEKKRAAXXXXXXXXXXXXXXXKNPNLPKRPPTAFFLFMDDFRKEYKAANPDSKG 448
           V KKP EKK A                K+PN+PKRPPTAFFLFMDDFRKEYK +NPDSK 
Sbjct: 67  VKKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKN 126

Query: 447 VAAVAKEGGERWKSMTDEEKKVYVDKAAELKAEY 346
           V+ VAKEGGE+WKSMTDEEKK YVDKAAELKAEY
Sbjct: 127 VSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEY 160


>gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
          Length = 208

 Score =  216 bits (551), Expect = 6e-54
 Identities = 112/154 (72%), Positives = 120/154 (77%)
 Frame = -1

Query: 807 KRVEAETTSSLKRARDGSAFTRCEGCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVEKATE 628
           KRVE +T   +KRARDGSAFTRCE CNKDVPVVLIDMHSCSLDSKIRMNLEAQVVEK TE
Sbjct: 15  KRVEVDT---MKRARDGSAFTRCEVCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVEKETE 71

Query: 627 VVKKPTEKKRAAXXXXXXXXXXXXXXXKNPNLPKRPPTAFFLFMDDFRKEYKAANPDSKG 448
           V  KP E+KRAA                N N PKR PTAFFLFMDDFRKEYK  +PD+K 
Sbjct: 72  VKNKPVERKRAAPSENKERKVKKGKKNVNTNKPKRAPTAFFLFMDDFRKEYKELHPDNKS 131

Query: 447 VAAVAKEGGERWKSMTDEEKKVYVDKAAELKAEY 346
           VA+VAKEGGERW+SMT EEKK Y D+AAELKAEY
Sbjct: 132 VASVAKEGGERWRSMTIEEKKPYTDRAAELKAEY 165


>ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
           gi|118483462|gb|ABK93630.1| unknown [Populus
           trichocarpa] gi|222853809|gb|EEE91356.1| high mobility
           group family [Populus trichocarpa]
          Length = 201

 Score =  211 bits (536), Expect = 3e-52
 Identities = 105/151 (69%), Positives = 117/151 (77%)
 Frame = -1

Query: 801 VEAETTSSLKRARDGSAFTRCEGCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVEKATEVV 622
           V+A TT+SL RA+DGSAFT+CE C KDVPV LI  HSCSLD+KI+MNLEAQVVEK TE  
Sbjct: 15  VDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNLEAQVVEKPTEAK 74

Query: 621 KKPTEKKRAAXXXXXXXXXXXXXXXKNPNLPKRPPTAFFLFMDDFRKEYKAANPDSKGVA 442
           +KP E+K+ +               ++PN PKRPPTAFFLFMDDFRKEYK ANPDSK V 
Sbjct: 75  QKPAERKKGSSTEPKLKKAKKEKKGRDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVK 134

Query: 441 AVAKEGGERWKSMTDEEKKVYVDKAAELKAE 349
            VAKEGG RWKSMTDEEKK YVDKAAELKAE
Sbjct: 135 KVAKEGGVRWKSMTDEEKKQYVDKAAELKAE 165


>ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
           gi|449531370|ref|XP_004172659.1| PREDICTED: high
           mobility group B protein 7-like [Cucumis sativus]
          Length = 207

 Score =  197 bits (502), Expect = 3e-48
 Identities = 108/163 (66%), Positives = 117/163 (71%), Gaps = 9/163 (5%)
 Frame = -1

Query: 807 KRVEAE------TTSSLKRARDGSAFTRCEGCNKDVPVVLIDMHSCSLDSKIRMNLEAQV 646
           KRVEA       T  SL RA+DGSAF RC+ C K VPV LI MHSCSLD+KIRMNLE+Q 
Sbjct: 11  KRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLESQT 70

Query: 645 VEKATEVVKKPTEKKRAAXXXXXXXXXXXXXXXK---NPNLPKRPPTAFFLFMDDFRKEY 475
           VEK T+  KKP EKKR+A               K   +PN PKRPPTAFF+FMDDFRK Y
Sbjct: 71  VEKQTQS-KKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDFRKSY 129

Query: 474 KAANPDSKGVAAVAKEGGERWKSMTDEEKKVYVDKAAELKAEY 346
           K ANPDSKGV  VAKEGGE+WKSMTDEEKK Y DKAAELKAEY
Sbjct: 130 KEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEY 172


>ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
           gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B,
           putative [Ricinus communis]
          Length = 196

 Score =  196 bits (497), Expect = 1e-47
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 4/158 (2%)
 Frame = -1

Query: 807 KRVEAETTS----SLKRARDGSAFTRCEGCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVE 640
           KRVEAE T+    S+ R +DGSAF RC+ C KDVPV LI MHSCSL+++I+MNLEAQ+VE
Sbjct: 4   KRVEAEDTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEAQIVE 63

Query: 639 KATEVVKKPTEKKRAAXXXXXXXXXXXXXXXKNPNLPKRPPTAFFLFMDDFRKEYKAANP 460
           K  E  KKP E+K+                  NPN PKRPPTAFF+F+D+FRK +K ANP
Sbjct: 64  KPAETTKKPAERKKPTSTEPKAKKAKKDKKPNNPNKPKRPPTAFFIFLDEFRKTFKEANP 123

Query: 459 DSKGVAAVAKEGGERWKSMTDEEKKVYVDKAAELKAEY 346
           DSK V  VAKE GE+WK+MTDEEKK Y DKA ELKAEY
Sbjct: 124 DSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEY 161


Top