BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028571
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             65   4e-09
ref|XP_002461982.1| hypothetical protein SORBIDRAFT_02g011546 [S...    63   3e-08
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    58   7e-07
gb|AAU90246.1| hypothetical protein [Oryza sativa Japonica Group]      58   7e-07
emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]    57   1e-06

>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
 Frame = -2

Query: 404 QGGEPGGPYIPFLFLLVTQNLSAIFNHALRSNFLSGFDSTLPRNFNHLMFADDLILITKA 225
           +G   G P  P+LF++  + LS   + A     L            HL+FADDL++ +KA
Sbjct: 18  RGLRQGDPLSPYLFIIAMEVLSRKLDQAASIGQLQLHSKCANPLLTHLIFADDLVIFSKA 77

Query: 224 SRLSARNTLFC----GKNPIL---TSLPFIFLAGST-REFPNLWLLLGIKLGSFPFTYLG 69
           SR S +    C    G+N  L   T    +FL G T  E   L   +GI LG+FP  YLG
Sbjct: 78  SRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLG 137

Query: 68  APISPFCLPTSHFQPLVTK 12
            P++   L  + ++PL+ K
Sbjct: 138 LPVNTHRLTKADYEPLLEK 156


>ref|XP_002461982.1| hypothetical protein SORBIDRAFT_02g011546 [Sorghum bicolor]
            gi|241925359|gb|EER98503.1| hypothetical protein
            SORBIDRAFT_02g011546 [Sorghum bicolor]
          Length = 761

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
 Frame = -2

Query: 407  FQGGEPGGPYIPFLFLLVTQNLSAIFNHALRSNFLSG-FDSTLPRNFNHLMFADDLILIT 231
            F+G   G P  P LF LV   L  + + A+R   +SG  ++ +P   +H+ +ADD +++ 
Sbjct: 606  FRGLRQGDPLSPLLFNLVADALGVMLDSAVRQGHISGVLNNLIPGGISHIQYADDTVIMV 665

Query: 230  KASRLSARNT---LFCGKNPILTSLPF------IFLAGSTR-EFPNLWLLLGIKLGSFPF 81
              +  S RN    L+C +   L+ L        IF+ G T+ E  NL  +L   LG FP 
Sbjct: 666  DTTVQSIRNLKLILYCFE--WLSGLKINYHKSEIFVFGVTQGEKENLANMLNCVLGDFPM 723

Query: 80   TYLGAPISPFCLPTSHFQPLVTK 12
             YLG PIS   L  S F+ +  K
Sbjct: 724  KYLGIPISYKHLNMSAFRTITQK 746


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
 Frame = -2

Query: 404 QGGEPGGPYIPFLFLLVTQNLSAIFNHALRSNFLSGFDSTLPRNFNHLMFADDLILITKA 225
           +G   G P  P+LF+L  +  S +      S +++    T     +HLMFADD+++    
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDG 604

Query: 224 SRLSARNTL-----FCGKNPIL--TSLPFIFLAGSTREFPNLWLLLGIKLGSFPFTYLGA 66
              S    +     F G + +L  T+   ++ AG ++   +     G KLGS P  YLG 
Sbjct: 605 KSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASYGFKLGSLPVRYLGL 664

Query: 65  PISPFCLPTSHFQPLVTK 12
           P+    L  + + PL+ K
Sbjct: 665 PLMSRKLTIAEYAPLIEK 682


>gb|AAU90246.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1275

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
 Frame = -2

Query: 407  FQGGEPGGPYIPFLFLLVTQNLSAIFNHALRSNFLSGFD-STLPRNFNHLMFADDLILIT 231
            ++G   G P  P LF LV+  L+AIF++A R+  L+G      P    HL +ADD ++  
Sbjct: 983  YRGLRQGDPLSPLLFNLVSDALAAIFDNAKRAGILTGLVLEIFPNGITHLQYADDTVIFI 1042

Query: 230  KASR---LSARNTLFCGKNPILTSLPF----IFLAG-STREFPNLWLLLGIKLGSFPFTY 75
                   ++++  L+C +      + +    +F  G    E   +  +L   +G+FP  Y
Sbjct: 1043 PFDTNQIVASKFLLYCFEEMAGMKINYHKSEVFTVGLEIDETERVAHMLNFPIGTFPMKY 1102

Query: 74   LGAPISPFCLPTSHFQPLVTK 12
            LG PISP  + T     L+ K
Sbjct: 1103 LGLPISPEKILTQDLNFLLEK 1123


>emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]
          Length = 2416

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
 Frame = -2

Query: 404  QGGEPGGPYIPFLFLLVTQNLSAIFNHALRSNFLSGF----DSTLPRNFNHLMFADDLIL 237
            +G   G P  P+LF+L  + LS +F  A    FLSG        +  N +HL+FADD I+
Sbjct: 1314 KGLRQGDPLSPYLFILGMEVLSTLFRRAGEGGFLSGCRLRGRGGVEMNVSHLLFADDTII 1373

Query: 236  ITKASRLSARN-----TLFCGKNPILTSL--PFIFLAGSTREFPNLWLLLGIKLGSFPFT 78
              KA R    N       F   + +  +L    +   G   E   L   LG KLG+ P  
Sbjct: 1374 FCKAEREQVTNLSWILAWFEAASGLRINLAKSALIPVGQVDELEELAAELGCKLGALPTV 1433

Query: 77   YLGAPI 60
            YLG P+
Sbjct: 1434 YLGLPL 1439