BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028441
         (571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   107   1e-21
ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-16
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...    72   8e-11
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...    72   8e-11

>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  107 bits (268), Expect = 1e-21
 Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
 Frame = -2

Query: 447 CKQSQSLV--LNSVLESYSSMRMIPEALDSFRFIMVCQCVPSTRCCNAFLESVLSSSHTQ 274
           C+   SL+  LN VLE YS      E L+ ++ + V  C PS   CN  L+++   S  +
Sbjct: 158 CRGKSSLLCTLNFVLEFYSHKGSFLEGLEVYKKMRVIGCTPSVHACNVLLDALQRESEIR 217

Query: 273 KAWNFHALALRIGMIPDSRTWSLLAKLFCKEGKLENSVKVLSLGCCDASAYDLVVGCYSK 94
            AW F+   +R+G++PD  TWSL+A + CK+G  E  VK+L +G C++  Y+ VV  YSK
Sbjct: 218 LAWCFYCAMIRVGVLPDKFTWSLVAHILCKDGNFERIVKLLDMGICNSVMYNAVVDYYSK 277

Query: 93  KGDFRAVIHLLRVMTHR 43
            GDF+A    L  M  R
Sbjct: 278 NGDFKAAFCRLNEMYDR 294


>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = -2

Query: 444 KQSQSLVLNSVLESYSSMRMIPEALDSFRFIMVCQCVPSTRCCNAFLESVLSSSHTQKAW 265
           K S+S VL  VLE YSS  +  EAL+ FR I +   VPS R CNA L+S+   +  + AW
Sbjct: 140 KDSESPVLGFVLECYSSKGLFIEALEVFRRITIHGYVPSVRSCNALLDSLQRENEIKLAW 199

Query: 264 NFHALALRIGMIPDSRTWSLLAKLFCKEGKLENSVKVLSLG-CCDASAYDLVVGCYSKKG 88
                 +R G++PD   +  +A + CK GKLE  V++L +   C+A  Y LV+ CY ++G
Sbjct: 200 CVCGALIRNGVLPD---YVRIALILCKNGKLERVVRLLDMSIVCNALIYKLVIDCYCERG 256

Query: 87  DFRAVIHLLRVMTHR 43
           +F A  H L  M +R
Sbjct: 257 NFSAAFHYLNEMCNR 271


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 46/134 (34%), Positives = 73/134 (54%)
 Frame = -2

Query: 444 KQSQSLVLNSVLESYSSMRMIPEALDSFRFIMVCQCVPSTRCCNAFLESVLSSSHTQKAW 265
           K  +S   + VLE YS   +  E+L+ FR +     + S   CN+ L+ +   +  + AW
Sbjct: 132 KSLKSDAFSFVLECYSHKGLFMESLEMFRKMRGNGFIASGTACNSVLDVLQRENEIKLAW 191

Query: 264 NFHALALRIGMIPDSRTWSLLAKLFCKEGKLENSVKVLSLGCCDASAYDLVVGCYSKKGD 85
            F+   ++ G++PD  TWSL+A++ CK+G  E  VK L +G  ++  Y+ V+ C SK+GD
Sbjct: 192 CFYCAMIKDGVLPDKLTWSLIAQILCKDGNFERIVKFLDMGVYNSVLYNGVIDCCSKRGD 251

Query: 84  FRAVIHLLRVMTHR 43
           F A    L  M  R
Sbjct: 252 FEAAFERLNQMCER 265


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score = 71.6 bits (174), Expect = 8e-11
 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
 Frame = -2

Query: 438 SQSLVLNSVLESYSSMRMIPEALDSFRFIMVCQCVPSTRCCNAFLESVLSSSHTQKAWNF 259
           S S+ L+ VLE Y+        L+ F F+   +  PS    N+ L S++  +  + A   
Sbjct: 151 SLSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKENQFRVALCL 210

Query: 258 HALALRIGMIPDSRTWSLLAKLFCKEGKLENSVKVLSLGCCDASAYDLVVGCYSKKGDFR 79
           ++  +R G++ D  TW L+A++ C++G+ ++  K++  G      Y  +V CYS+ G+F 
Sbjct: 211 YSAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRNGEFD 270

Query: 78  AVIHLLRVMTHRS-EISF 28
           AV  L+  M  +  E+SF
Sbjct: 271 AVFSLIHEMDDKKLELSF 288


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score = 71.6 bits (174), Expect = 8e-11
 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
 Frame = -2

Query: 438 SQSLVLNSVLESYSSMRMIPEALDSFRFIMVCQCVPSTRCCNAFLESVLSSSHTQKAWNF 259
           S S+ L+ VLE Y+        L+ F F+   +  PS    N+ L S++  +  + A   
Sbjct: 151 SLSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKENQFRVALCL 210

Query: 258 HALALRIGMIPDSRTWSLLAKLFCKEGKLENSVKVLSLGCCDASAYDLVVGCYSKKGDFR 79
           ++  +R G++ D  TW L+A++ C++G+ ++  K++  G      Y  +V CYS+ G+F 
Sbjct: 211 YSAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRNGEFD 270

Query: 78  AVIHLLRVMTHRS-EISF 28
           AV  L+  M  +  E+SF
Sbjct: 271 AVFSLIHEMDDKKLELSF 288