BLASTX nr result

ID: Dioscorea21_contig00028265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00028265
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512403.1| cyclin h, putative [Ricinus communis] gi|223...    96   2e-18
ref|XP_002284178.1| PREDICTED: cyclin-H1-1 [Vitis vinifera] gi|2...    95   7e-18
ref|XP_003526927.1| PREDICTED: cyclin-H1-1 isoform 2 [Glycine max]     88   6e-16
ref|XP_003526926.1| PREDICTED: cyclin-H1-1 isoform 1 [Glycine max]     88   6e-16
gb|ACU23520.1| unknown [Glycine max]                                   88   6e-16

>ref|XP_002512403.1| cyclin h, putative [Ricinus communis] gi|223548364|gb|EEF49855.1|
           cyclin h, putative [Ricinus communis]
          Length = 312

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 44/63 (69%), Positives = 51/63 (80%)
 Frame = +1

Query: 16  MADFQTSTHRSKWILSPQDLVEKHETANQRAAKMLEQYGTTRLEVSVDGSLSYPEPSHEH 195
           MADFQTSTHR KWI +PQ LVEKH+  NQRA +MLE+YGTTR+EV VDGS+SYPEP    
Sbjct: 1   MADFQTSTHRVKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSISYPEPQVNT 60

Query: 196 REN 204
            +N
Sbjct: 61  GDN 63


>ref|XP_002284178.1| PREDICTED: cyclin-H1-1 [Vitis vinifera]
           gi|296089659|emb|CBI39478.3| unnamed protein product
           [Vitis vinifera]
          Length = 335

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/63 (66%), Positives = 51/63 (80%)
 Frame = +1

Query: 16  MADFQTSTHRSKWILSPQDLVEKHETANQRAAKMLEQYGTTRLEVSVDGSLSYPEPSHEH 195
           MADFQTSTHRSKWI +PQDL+EK++ ANQRA + LE+YG TR+EV  DGSL YPEP    
Sbjct: 1   MADFQTSTHRSKWIFTPQDLIEKYKAANQRAKQTLEKYGVTRIEVDADGSLQYPEPQISA 60

Query: 196 REN 204
           ++N
Sbjct: 61  KDN 63


>ref|XP_003526927.1| PREDICTED: cyclin-H1-1 isoform 2 [Glycine max]
          Length = 314

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = +1

Query: 16  MADFQTSTHRSKWILSPQDLVEKHETANQRAAKMLEQYGTTRLEVSVDGSLSYPEP 183
           MADFQTSTHR+KWI SPQ LVEK+  ANQRA ++LE+ G T +EV VDGSLSYPEP
Sbjct: 1   MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEP 56


>ref|XP_003526926.1| PREDICTED: cyclin-H1-1 isoform 1 [Glycine max]
          Length = 335

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = +1

Query: 16  MADFQTSTHRSKWILSPQDLVEKHETANQRAAKMLEQYGTTRLEVSVDGSLSYPEP 183
           MADFQTSTHR+KWI SPQ LVEK+  ANQRA ++LE+ G T +EV VDGSLSYPEP
Sbjct: 1   MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEP 56


>gb|ACU23520.1| unknown [Glycine max]
          Length = 335

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = +1

Query: 16  MADFQTSTHRSKWILSPQDLVEKHETANQRAAKMLEQYGTTRLEVSVDGSLSYPEP 183
           MADFQTSTHR+KWI SPQ LVEK+  ANQRA ++LE+ G T +EV VDGSLSYPEP
Sbjct: 1   MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEP 56


Top