BLASTX nr result
ID: Dioscorea21_contig00028198
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00028198
(338 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi... 115 3e-24
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi... 107 8e-22
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ... 99 3e-19
ref|NP_198189.1| pentatricopeptide repeat-containing protein [Ar... 97 1e-18
ref|NP_680234.1| pentatricopeptide repeat-containing protein [Ar... 97 1e-18
>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product
[Vitis vinifera]
Length = 765
Score = 115 bits (289), Expect = 3e-24
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = -1
Query: 302 NSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNLLF 123
NSI TQ+I+ CRSGRT+ AWD+LH +EA + N+LLT L + R+F+RMN L
Sbjct: 269 NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLL 328
Query: 122 SEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
+EMK+M ++P VVT+GILINHL K RRVD+AL+VF+ M
Sbjct: 329 AEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/101 (28%), Positives = 57/101 (56%)
Frame = -1
Query: 308 SSNSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNL 129
S + + F +I FCR + ++A+++L ++ + +N+L++ +K DF +
Sbjct: 553 SPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHR 612
Query: 128 LFSEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAMT 6
L +M G+ PTVVTYG LI+ + +D+A+++F M+
Sbjct: 613 LMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653
Score = 55.5 bits (132), Expect = 4e-06
Identities = 25/98 (25%), Positives = 52/98 (53%)
Frame = -1
Query: 302 NSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNLLF 123
N++ +T +I FC A +L + S +A + +L++GL++ R + +
Sbjct: 485 NAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVL 544
Query: 122 SEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
S+MK+ G P +V++ +LIN + ++D+A ++ M
Sbjct: 545 SKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582
>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 107 bits (268), Expect = 8e-22
Identities = 53/105 (50%), Positives = 72/105 (68%)
Frame = -1
Query: 323 GRRPSSSNSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDF 144
G+ ++I TQ+I+ CRSG TN AW++L +A N+LLTGL K R+F
Sbjct: 109 GKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREF 168
Query: 143 QRMNLLFSEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
+MNLL +MKDM ++PTV+T+GILINHL K RR+DDAL+VF+ M
Sbjct: 169 GKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKM 213
>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297324225|gb|EFH54646.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 766
Score = 99.4 bits (246), Expect = 3e-19
Identities = 50/100 (50%), Positives = 69/100 (69%)
Frame = -1
Query: 308 SSNSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNL 129
S NS+ T+ I++ C++ RTN AWD+L + LEAP FN+LL+ L ++ + RMN
Sbjct: 256 SPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNA 315
Query: 128 LFSEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
L +M +M ++P VVT GILIN L KSRRVD+ALQVF+ M
Sbjct: 316 LVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQM 355
>ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of
Arabidopsis thaliana salt inducible protein-like
proteins; contains similarity to Pfam family PF01535
(Domain of unknown function), score=340.5, E=1.9e-98,
N=2 [Arabidopsis thaliana] gi|332006410|gb|AED93793.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 727
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/100 (48%), Positives = 68/100 (68%)
Frame = -1
Query: 308 SSNSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNL 129
S NS+ T+ I++ C++ R N AWD+L + LEAP FN+LL+ L ++ D RMN
Sbjct: 256 SPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMND 315
Query: 128 LFSEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
L +M ++ ++P VVT GILIN L KSRRVD+AL+VF+ M
Sbjct: 316 LVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM 355
>ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g28460 gi|9502149|gb|AAF88002.1| contains similarity
to Pfam family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120
[Arabidopsis thaliana] gi|27363272|gb|AAO11555.1|
At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/100 (48%), Positives = 68/100 (68%)
Frame = -1
Query: 308 SSNSIQFTQMITNFCRSGRTNDAWDLLHAETSSANSLEAPAFNSLLTGLAKDRDFQRMNL 129
S NS+ T+ I++ C++ R N AWD+L + LEAP FN+LL+ L ++ D RMN
Sbjct: 256 SPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMND 315
Query: 128 LFSEMKDMGVKPTVVTYGILINHLVKSRRVDDALQVFDAM 9
L +M ++ ++P VVT GILIN L KSRRVD+AL+VF+ M
Sbjct: 316 LVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM 355