BLASTX nr result
ID: Dioscorea21_contig00027487
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00027487
(285 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511804.1| pentatricopeptide repeat-containing protein,... 86 2e-15
ref|XP_002302563.1| predicted protein [Populus trichocarpa] gi|2... 84 1e-14
ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containi... 84 2e-14
ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containi... 81 8e-14
ref|XP_003623821.1| Pentatricopeptide repeat-containing protein ... 81 8e-14
>ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548984|gb|EEF50473.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 607
Score = 86.3 bits (212), Expect = 2e-15
Identities = 38/92 (41%), Positives = 63/92 (68%)
Frame = -2
Query: 281 ILYSTNPNDSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSL 102
+L + ND +SWN++IV R G ++AL LF +MH R + +D++T+PS LNS A +
Sbjct: 278 VLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKD 337
Query: 101 VLTGQTIHSLLLRSGFQRHSHIGNALVDMYAK 6
+ + ++ H L++++GF ++ + NALVDMYAK
Sbjct: 338 IQSAKSAHCLIIKTGFGAYTLVNNALVDMYAK 369
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/84 (35%), Positives = 47/84 (55%)
Frame = -2
Query: 257 DSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIH 78
D +SW +L+ S +G + DA+ LF M + D+ S L++ A L++ GQ +H
Sbjct: 387 DVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVH 446
Query: 77 SLLLRSGFQRHSHIGNALVDMYAK 6
+ +L+SG I N+LV MYAK
Sbjct: 447 ATILKSGLCSSLSIDNSLVTMYAK 470
Score = 54.3 bits (129), Expect = 1e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = -2
Query: 248 SWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIHSLL 69
+W A++ S +G A+ F M + ++FTFPS L + +S + G +H +
Sbjct: 188 TWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCI 247
Query: 68 LRSGFQRHSHIGNALVDMYAK 6
+RSGF + + +ALVDMYAK
Sbjct: 248 VRSGFGANIFVQSALVDMYAK 268
>ref|XP_002302563.1| predicted protein [Populus trichocarpa] gi|222844289|gb|EEE81836.1|
predicted protein [Populus trichocarpa]
Length = 514
Score = 84.0 bits (206), Expect = 1e-14
Identities = 36/85 (42%), Positives = 56/85 (65%)
Frame = -2
Query: 260 NDSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTI 81
+D +SWN+LI+ R G DAL F KM R + +DE+T PS LNS A + ++ ++
Sbjct: 4 DDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISV 63
Query: 80 HSLLLRSGFQRHSHIGNALVDMYAK 6
H L++++GF+ + + NAL+DMYAK
Sbjct: 64 HCLIIKTGFEAYKLVNNALIDMYAK 88
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = -2
Query: 257 DSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIH 78
D +SW +L+ S +G + +A+ LF KM + D+ S L++ A L+++ GQ IH
Sbjct: 106 DVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIH 165
Query: 77 SLLLRSGFQRHSHIGNALVDMYAK 6
+ L++SG + + N+LV MYAK
Sbjct: 166 ATLVKSGLESSLSVDNSLVTMYAK 189
>ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 83.6 bits (205), Expect = 2e-14
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = -2
Query: 281 ILYSTNPNDSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSL 102
+L + +D +SWN++IV R GL +AL LF MH R + +DEFT+PS LN + +
Sbjct: 297 MLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMD 356
Query: 101 VLTGQTIHSLLLRSGFQRHSHIGNALVDMYAK 6
+ ++HSL++++GF+ + + NALVDMYAK
Sbjct: 357 MRNAMSVHSLIVKTGFEAYKLVNNALVDMYAK 388
Score = 60.1 bits (144), Expect = 2e-07
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = -2
Query: 251 ISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIHSL 72
+ W A++ S++G A+ F M + ++FTFPS L + +S G +H
Sbjct: 206 VLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGC 265
Query: 71 LLRSGFQRHSHIGNALVDMYAK 6
++RSGF + +G+ALVDMY+K
Sbjct: 266 IVRSGFGANVFVGSALVDMYSK 287
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = -2
Query: 257 DSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIH 78
D ISW +L+ +G + +AL LF +M + D+ + L++ A L+++ G+ +H
Sbjct: 406 DVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVH 465
Query: 77 SLLLRSGFQRHSHIGNALVDMYAK 6
+ L+SG + N+LV MYAK
Sbjct: 466 ANFLKSGLGSSLSVDNSLVSMYAK 489
>ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 81.3 bits (199), Expect = 8e-14
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = -2
Query: 251 ISWNALIVSSSRSGLHSDALHLFVKMHH-RALPLDEFTFPSALNSAAHLSLVLTGQTIHS 75
+++NA I SR+GLH AL LF +M R LP DE+TFP LNSAA L + +H+
Sbjct: 7 VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66
Query: 74 LLLRSGFQRHSHIGNALVDMYAK 6
LLLR+G H H+ NALVD YAK
Sbjct: 67 LLLRAGLVAHLHVANALVDAYAK 89
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = -2
Query: 257 DSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIH 78
D ++W +L+ +RSG H AL ++ M + DE+ +AL+S A + + GQ++H
Sbjct: 107 DVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVH 166
Query: 77 SLLLRSGFQRHSHIGNALVDMYAKS 3
+ +R G + +GN+LV MYAK+
Sbjct: 167 ATAVRLGLEPFLSVGNSLVSMYAKT 191
>ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 837
Score = 81.3 bits (199), Expect = 8e-14
Identities = 38/94 (40%), Positives = 62/94 (65%)
Frame = -2
Query: 284 HILYSTNPNDSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLS 105
++L + +D +SWN+L+V R GL +AL LF MH R + +D++TFPS LN S
Sbjct: 321 NMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGS 380
Query: 104 LVLTGQTIHSLLLRSGFQRHSHIGNALVDMYAKS 3
+ +++H L++++GF+ + + NALVDMYAK+
Sbjct: 381 --INPKSVHGLIIKTGFENYKLVSNALVDMYAKT 412
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/83 (33%), Positives = 45/83 (54%)
Frame = -2
Query: 254 SISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIHS 75
SI+W+++I + G +A LF M +FT S L + L L+ TG+ IH
Sbjct: 127 SITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHG 186
Query: 74 LLLRSGFQRHSHIGNALVDMYAK 6
++++GF+ + + LVDMYAK
Sbjct: 187 FVVKNGFEGNVFVVTGLVDMYAK 209
Score = 56.6 bits (135), Expect = 2e-06
Identities = 24/82 (29%), Positives = 49/82 (59%)
Frame = -2
Query: 251 ISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIHSL 72
+ W A++ +++G A+ F MH + + +++TFP+ L + + + G+ +H
Sbjct: 231 VLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGF 290
Query: 71 LLRSGFQRHSHIGNALVDMYAK 6
+++SGF + ++ +ALVDMYAK
Sbjct: 291 IVKSGFGSNVYVQSALVDMYAK 312
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = -2
Query: 257 DSISWNALIVSSSRSGLHSDALHLFVKMHHRALPLDEFTFPSALNSAAHLSLVLTGQTIH 78
D ISW +L+ +++ H ++L +F M + D+F S L++ A L+L+ G+ +H
Sbjct: 429 DVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVH 488
Query: 77 SLLLRSGFQRHSHIGNALVDMYAK 6
++SG + + N+LV MYAK
Sbjct: 489 LDFIKSGLRWSQSVYNSLVAMYAK 512