BLASTX nr result

ID: Dioscorea21_contig00027216 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00027216
         (230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002460248.1| hypothetical protein SORBIDRAFT_02g025370 [S...    93   2e-17
gb|ACN26818.1| unknown [Zea mays] gi|414589544|tpg|DAA40115.1| T...    91   8e-17
ref|NP_001145515.1| uncharacterized protein LOC100278924 [Zea ma...    91   8e-17
ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002515341.1| pentatricopeptide repeat-containing protein,...    87   1e-15

>ref|XP_002460248.1| hypothetical protein SORBIDRAFT_02g025370 [Sorghum bicolor]
           gi|241923625|gb|EER96769.1| hypothetical protein
           SORBIDRAFT_02g025370 [Sorghum bicolor]
          Length = 614

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 42/74 (56%), Positives = 57/74 (77%)
 Frame = +3

Query: 6   ILLDIMQKRDGLSWNSRGGMTALKVEILSGFTSSLFTPYILPQVTLDDPIEKYMTPFEES 185
           +L  I+ +++  SW SR G+ A+KVE LSGFT+SL TP+I PQ+ L+DP+EKYM PF+ES
Sbjct: 419 LLRQIVNEKECFSWTSRVGLVAVKVESLSGFTNSLLTPHIFPQIILNDPVEKYMVPFQES 478

Query: 186 NPLPSSLELKKVVM 227
            PLP+ L L+K VM
Sbjct: 479 RPLPADLILRKAVM 492


>gb|ACN26818.1| unknown [Zea mays] gi|414589544|tpg|DAA40115.1| TPA: hypothetical
           protein ZEAMMB73_157272 [Zea mays]
          Length = 620

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 41/74 (55%), Positives = 57/74 (77%)
 Frame = +3

Query: 6   ILLDIMQKRDGLSWNSRGGMTALKVEILSGFTSSLFTPYILPQVTLDDPIEKYMTPFEES 185
           +L  I+ +++  SW SR G+ A+KVE LSGFT+SL  P++ PQ+ L+DP+EKYM PF+ES
Sbjct: 419 LLRRIVNEKECFSWTSRVGLVAVKVESLSGFTNSLLRPHVFPQIILNDPVEKYMVPFQES 478

Query: 186 NPLPSSLELKKVVM 227
            PLP+ L L+KVVM
Sbjct: 479 RPLPADLILRKVVM 492


>ref|NP_001145515.1| uncharacterized protein LOC100278924 [Zea mays]
           gi|195657339|gb|ACG48137.1| hypothetical protein [Zea
           mays]
          Length = 313

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 41/74 (55%), Positives = 57/74 (77%)
 Frame = +3

Query: 6   ILLDIMQKRDGLSWNSRGGMTALKVEILSGFTSSLFTPYILPQVTLDDPIEKYMTPFEES 185
           +L  I+ +++  SW SR G+ A+KVE LSGFT+SL  P++ PQ+ L+DP+EKYM PF+ES
Sbjct: 112 LLRRIVNEKECFSWTSRVGLVAVKVESLSGFTNSLLRPHVFPQIILNDPVEKYMVPFQES 171

Query: 186 NPLPSSLELKKVVM 227
            PLP+ L L+KVVM
Sbjct: 172 RPLPADLILRKVVM 185


>ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g10690-like [Glycine max]
          Length = 590

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 39/75 (52%), Positives = 55/75 (73%)
 Frame = +3

Query: 3   KILLDIMQKRDGLSWNSRGGMTALKVEILSGFTSSLFTPYILPQVTLDDPIEKYMTPFEE 182
           K L +I+ K  G+SW SRGGM A ++E L GF+ SLF+P++LPQV+  +P+E YM  FE 
Sbjct: 409 KTLTEIVSKWKGISWTSRGGMVAYRIEALLGFSKSLFSPHLLPQVSPSEPVENYMIQFEA 468

Query: 183 SNPLPSSLELKKVVM 227
           + PL  S++L+KVVM
Sbjct: 469 TRPLQGSIKLRKVVM 483


>ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545285|gb|EEF46790.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 600

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 39/73 (53%), Positives = 55/73 (75%)
 Frame = +3

Query: 9   LLDIMQKRDGLSWNSRGGMTALKVEILSGFTSSLFTPYILPQVTLDDPIEKYMTPFEESN 188
           L  I+ + +G+SW +RGGM A+++E L GF  S+F+PY+LPQ++  +PIE  MTP EE+ 
Sbjct: 409 LRKIIPRWNGISWTNRGGMVAVRIEALLGFRKSIFSPYLLPQISSSEPIETIMTPLEEAQ 468

Query: 189 PLPSSLELKKVVM 227
           PL  +LELKKVVM
Sbjct: 469 PLLGTLELKKVVM 481


Top