BLASTX nr result

ID: Dioscorea21_contig00027164 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00027164
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272147.1| PREDICTED: upstream activation factor subuni...    65   6e-09
emb|CAN78429.1| hypothetical protein VITISV_011142 [Vitis vinifera]    65   6e-09
ref|XP_002463848.1| hypothetical protein SORBIDRAFT_01g007350 [S...    64   1e-08
ref|XP_002869158.1| hypothetical protein ARALYDRAFT_491238 [Arab...    64   2e-08
dbj|BAJ87657.1| predicted protein [Hordeum vulgare subsp. vulgare]     57   6e-08

>ref|XP_002272147.1| PREDICTED: upstream activation factor subunit spp27 [Vitis
           vinifera]
          Length = 145

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/47 (70%), Positives = 34/47 (72%)
 Frame = -1

Query: 142 AESKPSATPARKREPRGITKPCPISPELQALLGVEEIPRTQALKLIW 2
           A SKP A    KREPRGI KP  ISPE+Q  LGV EIPRTQALK IW
Sbjct: 51  AASKPPAAATGKREPRGIMKPRRISPEMQDFLGVPEIPRTQALKQIW 97


>emb|CAN78429.1| hypothetical protein VITISV_011142 [Vitis vinifera]
          Length = 145

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/47 (70%), Positives = 34/47 (72%)
 Frame = -1

Query: 142 AESKPSATPARKREPRGITKPCPISPELQALLGVEEIPRTQALKLIW 2
           A SKP A    KREPRGI KP  ISPE+Q  LGV EIPRTQALK IW
Sbjct: 51  AASKPPAAATGKREPRGIMKPRRISPEMQDFLGVPEIPRTQALKQIW 97


>ref|XP_002463848.1| hypothetical protein SORBIDRAFT_01g007350 [Sorghum bicolor]
           gi|241917702|gb|EER90846.1| hypothetical protein
           SORBIDRAFT_01g007350 [Sorghum bicolor]
          Length = 143

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
 Frame = -1

Query: 211 PVLPLAVSL--PRRILAPLPIRAVKAESKPSA---TPARKREPRGITKPCPISPELQALL 47
           P LP A S   PRR  A L +RA  A SK  A   T  +K+   GIT+P P+SP LQA++
Sbjct: 21  PRLPAAASFAPPRRAAAALVVRAAAASSKSPAAAETAPKKKRATGITQPKPVSPALQAIV 80

Query: 46  GVEEIPRTQALKLIW 2
           G   IPRT+ALK +W
Sbjct: 81  GEPVIPRTEALKRLW 95


>ref|XP_002869158.1| hypothetical protein ARALYDRAFT_491238 [Arabidopsis lyrata subsp.
           lyrata] gi|297314994|gb|EFH45417.1| hypothetical protein
           ARALYDRAFT_491238 [Arabidopsis lyrata subsp. lyrata]
          Length = 144

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/68 (47%), Positives = 41/68 (60%)
 Frame = -1

Query: 205 LPLAVSLPRRILAPLPIRAVKAESKPSATPARKREPRGITKPCPISPELQALLGVEEIPR 26
           L L+   P  +     + +  A S    T  + REPRGI KP P+SPE+Q ++GV EIPR
Sbjct: 30  LRLSPHRPANLRMVRAVTSATAASSDPTTTTKTREPRGIMKPRPVSPEMQDVVGVPEIPR 89

Query: 25  TQALKLIW 2
           TQALK IW
Sbjct: 90  TQALKRIW 97


>dbj|BAJ87657.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 157

 Score = 57.4 bits (137), Expect(2) = 6e-08
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = -1

Query: 169 APLPIRAVKAESKPSATPARKREPRGITKPCPISPELQALLGVEEIPRTQALKLIW 2
           A + +RA    +  +A P +KR   GIT P P+SP LQA +G  E+PRT+A+K IW
Sbjct: 52  AAVVVRAAAKSTAAAAAPNKKRAATGITIPRPVSPALQAFMGAAEVPRTEAMKRIW 107



 Score = 24.3 bits (51), Expect(2) = 6e-08
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 209 RPPARRLPSSEDPRPAPHP 153
           +PP R  P  E P+  PHP
Sbjct: 7   KPPRRSDPREETPKWRPHP 25


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