BLASTX nr result

ID: Dioscorea21_contig00026977 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026977
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299599.1| predicted protein [Populus trichocarpa] gi|2...    65   4e-09
ref|XP_002304146.1| predicted protein [Populus trichocarpa] gi|2...    65   7e-09
ref|XP_002460288.1| hypothetical protein SORBIDRAFT_02g026020 [S...    60   1e-07
gb|AAD25792.1|AC006577_28 F15I1.28, partial [Arabidopsis thaliana]     57   1e-06
ref|XP_002891794.1| predicted protein [Arabidopsis lyrata subsp....    57   1e-06

>ref|XP_002299599.1| predicted protein [Populus trichocarpa] gi|222846857|gb|EEE84404.1|
           predicted protein [Populus trichocarpa]
          Length = 170

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 44/115 (38%), Positives = 55/115 (47%), Gaps = 38/115 (33%)
 Frame = -3

Query: 240 EDDVGAVSGAGTPR-RLAMKALTTQIREMAIRASGAYRQCKPCS---------------- 112
           E+DV  V+   TPR + A+KALT QI++MA++ASGAYR CKPCS                
Sbjct: 22  EEDVD-VAALETPRTKQAIKALTAQIKDMAVKASGAYRNCKPCSGSSNNNSNRNYAESDA 80

Query: 111 ---------------------RAWERRECTESEGLESGNGTPASMSGRTEESASM 10
                                R W +      +GL  G GTPAS+SGRTE  A M
Sbjct: 81  ASDSARFHCSYRRTGSSNSTPRMWGKEMEARLKGLSGGEGTPASVSGRTESVAFM 135


>ref|XP_002304146.1| predicted protein [Populus trichocarpa] gi|222841578|gb|EEE79125.1|
           predicted protein [Populus trichocarpa]
          Length = 170

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/114 (35%), Positives = 51/114 (44%), Gaps = 37/114 (32%)
 Frame = -3

Query: 240 EDDVGAVSGAGTPRRLAMKALTTQIREMAIRASGAYRQCKPCS----------------- 112
           E+DV   +      + AMKALT Q+++MA++ASGAYR CKPCS                 
Sbjct: 22  EEDVDVAAFETLRTKHAMKALTAQMKDMAVKASGAYRNCKPCSGSSSNNNNRNYAESDAA 81

Query: 111 --------------------RAWERRECTESEGLESGNGTPASMSGRTEESASM 10
                               R W +      +GL SG GTPAS+SGRTE    M
Sbjct: 82  SDSARFHCLYRRAGSSNSTPRKWGKESEARLKGLSSGEGTPASVSGRTESVVFM 135


>ref|XP_002460288.1| hypothetical protein SORBIDRAFT_02g026020 [Sorghum bicolor]
           gi|241923665|gb|EER96809.1| hypothetical protein
           SORBIDRAFT_02g026020 [Sorghum bicolor]
          Length = 416

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 6/50 (12%)
 Frame = -3

Query: 243 PEDDV-----GAVSGAGTPR-RLAMKALTTQIREMAIRASGAYRQCKPCS 112
           PEDD      GA+ GAGTP  R A+KALT QI++MA++ASGAYR CKPC+
Sbjct: 24  PEDDDVVDGGGAIGGAGTPSTRHAIKALTAQIKDMALKASGAYRHCKPCA 73


>gb|AAD25792.1|AC006577_28 F15I1.28, partial [Arabidopsis thaliana]
          Length = 169

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 38/105 (36%)
 Frame = -3

Query: 210 GTPR-RLAMKALTTQIREMAIRASGAYRQCKPCS-------------------------- 112
           GTPR + A+K+LT+Q+++MA++ASGAY+ CKPCS                          
Sbjct: 30  GTPRTKQAIKSLTSQLKDMAVKASGAYKNCKPCSGTTNRNQNRNYADSDAASDSGRFHYS 89

Query: 111 -----------RAWERRECTESEGLESGNGTPASMSGRTEESASM 10
                      + W     +  +G+ S  GTP SMSGRTE    M
Sbjct: 90  YQRAGTATSTPKIWGNEMESRLKGISSEEGTPTSMSGRTESIVFM 134


>ref|XP_002891794.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297337636|gb|EFH68053.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 345

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 38/105 (36%)
 Frame = -3

Query: 210 GTPR-RLAMKALTTQIREMAIRASGAYRQCKPCS-------------------------- 112
           GTPR + A+K+LT+Q+++MA++ASGAY+ CKPCS                          
Sbjct: 30  GTPRTKQAIKSLTSQLKDMAVKASGAYKNCKPCSGTSNRNQNRNYADSDVASDSGRFHYA 89

Query: 111 -----------RAWERRECTESEGLESGNGTPASMSGRTEESASM 10
                      + W     +  +GL S  GTP SMSGRTE    M
Sbjct: 90  YQRAGTASSTPKIWGNDMESRLKGLSSEEGTPTSMSGRTESIVFM 134


Top