BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026933
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    63   2e-08
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    62   5e-08
gb|ABE80156.1| Ribonuclease H [Medicago truncatula]                    62   5e-08
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ...    62   5e-08
gb|AAK98741.1|AC090485_20 Hypothetical protein similar to putati...    60   1e-07

>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +1

Query: 22   IWKLHIAPKAKTFLWLLIHGKIKTYEFLYHLNLGPPD-PCAFCGLVLESATHLFYQCHVS 198
            IWK  +  K + F+W     KI T + L        D  C FC  V E+  HLF+ C ++
Sbjct: 844  IWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNKCQFCDKV-ETVQHLFFDCPLA 902

Query: 199  AKIWNMVGCIANVEINLLDLCARGQWLDFHSHGNSLFLASLIAATLWQIW 348
              IWN++ C  NV+  L      G W+          +   IAA LW IW
Sbjct: 903  RLIWNIIACALNVKPVLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIW 952


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1184

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
 Frame = +1

Query: 13   WSNIWKLHIAPKAKTFLWLLIHGKIKTYEFLYHLNLGPPDPCAFCGLVLESATHLFYQCH 192
            W N+WKL I PK K F W ++HG I     L   ++     C  C   +E   H+ + C 
Sbjct: 860  WDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCR 919

Query: 193  VSAKIWNMVGCIANVE----------INLLDLCARGQWLDFHSHGNSLFLASLIAATLWQ 342
             +  IW  +G  + ++          + + ++  +G  +   SH N++ +  LI    W 
Sbjct: 920  RAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIRKGGKV---SHLNAIGMTELILTGAWY 976

Query: 343  IW 348
            IW
Sbjct: 977  IW 978


>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/112 (30%), Positives = 43/112 (38%)
 Frame = +1

Query: 13  WSNIWKLHIAPKAKTFLWLLIHGKIKTYEFLYHLNLGPPDPCAFCGLVLESATHLFYQCH 192
           WS IW L +  K K  +WL     + T   L+  N+ P   CA CG   E+  H    CH
Sbjct: 120 WSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCH 179

Query: 193 VSAKIWNMVGCIANVEINLLDLCARGQWLDFHSHGNSLFLASLIAATLWQIW 348
            S  IW  +G   N      D        D+   G S  L  +    LW  W
Sbjct: 180 FSRSIWQKIGFTGN------DFFTATSAHDWFKIGMSSSLPDIFFGGLWWAW 225


>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1185

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
 Frame = +1

Query: 13   WSNIWKLHIAPKAKTFLWLLIHGKIKTYEFLYHLNLGPPDPCAFCGLVLESATHLFYQCH 192
            W N+WKL I PK K F W ++HG I     L   ++     C  C   +E   H+ + C 
Sbjct: 860  WDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCR 919

Query: 193  VSAKIWNMVGCIANVE----------INLLDLCARGQWLDFHSHGNSLFLASLIAATLWQ 342
             +  IW  +G  + ++          + + ++  +G  +   SH N++ +  LI    W 
Sbjct: 920  RAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIRKGGKV---SHLNAIGMTELILTGAWY 976

Query: 343  IW 348
            IW
Sbjct: 977  IW 978


>gb|AAK98741.1|AC090485_20 Hypothetical protein similar to putative retroelements [Oryza
           sativa Japonica Group] gi|27497213|gb|AAO17357.1|
           Putative retroelement [Oryza sativa Japonica Group]
           gi|108706160|gb|ABF93955.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
           gi|125584905|gb|EAZ25569.1| hypothetical protein
           OsJ_09395 [Oryza sativa Japonica Group]
          Length = 387

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
 Frame = +1

Query: 4   WIGWSNIWKLHIAPKAKTFLWLLIHGKIKTYEFLYHLNLGPPDPCAFCGLVLESATHLFY 183
           W  WS IW+    P+ K F WL+   ++ T   L+   + P   C  C   LE   H+F 
Sbjct: 223 WPPWSAIWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTPTCELCNANLEDTYHIFL 282

Query: 184 QCHVSAKIWNMVGCIANVEINLLDLCARGQWLDFHSHGNSLFLASLIAATL-----WQIW 348
           +C ++A  WNM+  I   EI+ L         D H+   S  L + +++T      W++W
Sbjct: 283 RCPMAAAFWNMIQIIP--EISSLS--------DLHNLELSGPLPTFLSSTFFLLCCWRLW 332