BLASTX nr result
ID: Dioscorea21_contig00026768
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dioscorea21_contig00026768 (445 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2... 103 2e-20 ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 102 3e-20 ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2... 101 7e-20 ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar... 98 6e-19 ref|XP_002879469.1| pentatricopeptide repeat-containing protein ... 95 7e-18 >ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa] Length = 585 Score = 103 bits (256), Expect = 2e-20 Identities = 63/142 (44%), Positives = 72/142 (50%), Gaps = 1/142 (0%) Frame = +3 Query: 21 HSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTLLLLHS 200 HSPAY FLL+AG RL LHQ HAHIIVSG AC AA YT + + Sbjct: 11 HSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLAC-AAGSISYTRQIFLA 69 Query: 201 IPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RVAPSNYTFTSVLKSCADLSASRT 377 +P PD V+PSNYTFTSV+KSCADLSA + Sbjct: 70 VPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKH 129 Query: 378 GISIHSHLLVHGFDQDSYVQTA 443 G +H H+LVHGF D YVQ A Sbjct: 130 GRVVHGHVLVHGFGLDVYVQAA 151 >ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera] Length = 561 Score = 102 bits (254), Expect = 3e-20 Identities = 61/146 (41%), Positives = 73/146 (50%) Frame = +3 Query: 6 TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185 T S HSPAY LL AG RL+PL Q HAH+IVSG AC+A + YT Sbjct: 13 TLSPSHSPAYQVLLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSIL-YTR 71 Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365 L SI PD + SNYTFT+V+K+CAD+S Sbjct: 72 QLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADIS 131 Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443 A R G IHSH+LV G+D DS+VQ A Sbjct: 132 ALRIGRPIHSHVLVCGYDSDSFVQAA 157 >ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa] Length = 584 Score = 101 bits (251), Expect = 7e-20 Identities = 63/142 (44%), Positives = 71/142 (50%), Gaps = 1/142 (0%) Frame = +3 Query: 21 HSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTLLLLHS 200 HSPAY LL+AG RL+ LHQ HAH+IVSG AC AA YT + Sbjct: 11 HSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLAC-AAGSISYTRQIFLI 69 Query: 201 IPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RVAPSNYTFTSVLKSCADLSASRT 377 +P PD VAPSNYTFTSV+KSCADL A R Sbjct: 70 VPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRH 129 Query: 378 GISIHSHLLVHGFDQDSYVQTA 443 G IH H+LV+GF D YVQTA Sbjct: 130 GRIIHGHVLVNGFGSDVYVQTA 151 >ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 583 Score = 98.2 bits (243), Expect = 6e-19 Identities = 59/146 (40%), Positives = 73/146 (50%) Frame = +3 Query: 6 TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185 T + +S AY ++RAG R++ L Q HAH+IV+G ACSA A YT Sbjct: 3 TKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIA-YTH 61 Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365 LL S+P PD V+PSNYTFTSV+KSCADLS Sbjct: 62 LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121 Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443 A R G +H H +V GF D+YVQ A Sbjct: 122 ALRIGKGVHCHAVVSGFGLDTYVQAA 147 >ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 583 Score = 94.7 bits (234), Expect = 7e-18 Identities = 57/146 (39%), Positives = 72/146 (49%) Frame = +3 Query: 6 TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185 T + +S AY ++RAG R++ L Q HAH+IV+ ACSA A YT Sbjct: 3 TKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIA-YTH 61 Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365 LL S+P PD V+PSNYTFTSV+KSCADLS Sbjct: 62 LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121 Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443 A + G +H H +V GF D+YVQ A Sbjct: 122 ALKIGKGVHCHAVVSGFGLDTYVQAA 147