BLASTX nr result

ID: Dioscorea21_contig00026768 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026768
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   102   3e-20
ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2...   101   7e-20
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...    98   6e-19
ref|XP_002879469.1| pentatricopeptide repeat-containing protein ...    95   7e-18

>ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1|
           predicted protein [Populus trichocarpa]
          Length = 585

 Score =  103 bits (256), Expect = 2e-20
 Identities = 63/142 (44%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
 Frame = +3

Query: 21  HSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTLLLLHS 200
           HSPAY FLL+AG RL  LHQ HAHIIVSG              AC AA    YT  +  +
Sbjct: 11  HSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLAC-AAGSISYTRQIFLA 69

Query: 201 IPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RVAPSNYTFTSVLKSCADLSASRT 377
           +P PD                                V+PSNYTFTSV+KSCADLSA + 
Sbjct: 70  VPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKH 129

Query: 378 GISIHSHLLVHGFDQDSYVQTA 443
           G  +H H+LVHGF  D YVQ A
Sbjct: 130 GRVVHGHVLVHGFGLDVYVQAA 151


>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  102 bits (254), Expect = 3e-20
 Identities = 61/146 (41%), Positives = 73/146 (50%)
 Frame = +3

Query: 6   TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185
           T S  HSPAY  LL AG RL+PL Q HAH+IVSG              AC+A +   YT 
Sbjct: 13  TLSPSHSPAYQVLLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSIL-YTR 71

Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365
            L  SI  PD                               +  SNYTFT+V+K+CAD+S
Sbjct: 72  QLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADIS 131

Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443
           A R G  IHSH+LV G+D DS+VQ A
Sbjct: 132 ALRIGRPIHSHVLVCGYDSDSFVQAA 157


>ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score =  101 bits (251), Expect = 7e-20
 Identities = 63/142 (44%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
 Frame = +3

Query: 21  HSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTLLLLHS 200
           HSPAY  LL+AG RL+ LHQ HAH+IVSG              AC AA    YT  +   
Sbjct: 11  HSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLAC-AAGSISYTRQIFLI 69

Query: 201 IPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RVAPSNYTFTSVLKSCADLSASRT 377
           +P PD                                VAPSNYTFTSV+KSCADL A R 
Sbjct: 70  VPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRH 129

Query: 378 GISIHSHLLVHGFDQDSYVQTA 443
           G  IH H+LV+GF  D YVQTA
Sbjct: 130 GRIIHGHVLVNGFGSDVYVQTA 151


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 59/146 (40%), Positives = 73/146 (50%)
 Frame = +3

Query: 6   TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185
           T  + +S AY  ++RAG R++ L Q HAH+IV+G              ACSA A   YT 
Sbjct: 3   TKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIA-YTH 61

Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365
           LL  S+P PD                               V+PSNYTFTSV+KSCADLS
Sbjct: 62  LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121

Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443
           A R G  +H H +V GF  D+YVQ A
Sbjct: 122 ALRIGKGVHCHAVVSGFGLDTYVQAA 147


>ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325308|gb|EFH55728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 583

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 57/146 (39%), Positives = 72/146 (49%)
 Frame = +3

Query: 6   TSSSLHSPAYVFLLRAGHRLRPLHQAHAHIIVSGXXXXXXXXXXXXXFACSAAAPRRYTL 185
           T  + +S AY  ++RAG R++ L Q HAH+IV+               ACSA A   YT 
Sbjct: 3   TKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIA-YTH 61

Query: 186 LLLHSIPEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAPSNYTFTSVLKSCADLS 365
           LL  S+P PD                               V+PSNYTFTSV+KSCADLS
Sbjct: 62  LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121

Query: 366 ASRTGISIHSHLLVHGFDQDSYVQTA 443
           A + G  +H H +V GF  D+YVQ A
Sbjct: 122 ALKIGKGVHCHAVVSGFGLDTYVQAA 147