BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026687
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001294384.1| RNA polymerase alpha subunit [Dioscorea elep...   132   1e-49
gb|AGE93315.1| RNA polymerase alpha subunit [Chamaedorea seifrizii]   123   7e-47
ref|YP_006073136.1| RNA polymerase alpha subunit (chloroplast) [...   123   7e-47
ref|YP_007475993.1| RNA polymerase alpha subunit [Bismarckia nob...   123   7e-47
gb|ABU85377.1| RNA polymerase alpha subunit [Elaeis oleifera]         123   7e-47

>ref|YP_001294384.1| RNA polymerase alpha subunit [Dioscorea elephantipes]
           gi|172048699|sp|A6MMN9.1|RPOA_DIOEL RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|148668077|gb|ABR01461.1| RNA polymerase alpha subunit
           [Dioscorea elephantipes]
          Length = 337

 Score =  132 bits (332), Expect(2) = 1e-49
 Identities = 62/63 (98%), Positives = 63/63 (100%)
 Frame = -3

Query: 314 TEPIDLCIELQIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 135
           TEPIDLCIEL+IKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL
Sbjct: 140 TEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 199

Query: 134 FLE 126
           FLE
Sbjct: 200 FLE 202



 Score = 89.4 bits (220), Expect(2) = 1e-49
 Identities = 42/45 (93%), Positives = 42/45 (93%)
 Frame = -2

Query: 135 FSRIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEADINFEENKN 1
           F  IWTNGSLTPKEALYEASRNLIDLFVPFLHAEE DINFEENKN
Sbjct: 200 FLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKN 244


>gb|AGE93315.1| RNA polymerase alpha subunit [Chamaedorea seifrizii]
          Length = 341

 Score =  123 bits (309), Expect(2) = 7e-47
 Identities = 59/63 (93%), Positives = 59/63 (93%)
 Frame = -3

Query: 314 TEPIDLCIELQIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 135
           TEPIDLCIELQIKRDRGYRMK   NSQDGSYPIDAV MPVRNANHSIHSYGNGNEKQEIL
Sbjct: 140 TEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEIL 199

Query: 134 FLE 126
           FLE
Sbjct: 200 FLE 202



 Score = 89.0 bits (219), Expect(2) = 7e-47
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -2

Query: 135 FSRIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEADINFEENKN 1
           F  IWTNGSLTPKEALYEASRNLIDLF+PFLHAEE DINFEENKN
Sbjct: 200 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKN 244


>ref|YP_006073136.1| RNA polymerase alpha subunit (chloroplast) [Elaeis guineensis]
           gi|325305739|gb|ADZ10900.1| RNA polymerase alpha subunit
           (chloroplast) [Elaeis guineensis]
          Length = 341

 Score =  123 bits (309), Expect(2) = 7e-47
 Identities = 59/63 (93%), Positives = 59/63 (93%)
 Frame = -3

Query: 314 TEPIDLCIELQIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 135
           TEPIDLCIELQIKRDRGYRMK   NSQDGSYPIDAV MPVRNANHSIHSYGNGNEKQEIL
Sbjct: 140 TEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEIL 199

Query: 134 FLE 126
           FLE
Sbjct: 200 FLE 202



 Score = 89.0 bits (219), Expect(2) = 7e-47
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -2

Query: 135 FSRIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEADINFEENKN 1
           F  IWTNGSLTPKEALYEASRNLIDLF+PFLHAEE DINFEENKN
Sbjct: 200 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKN 244


>ref|YP_007475993.1| RNA polymerase alpha subunit [Bismarckia nobilis]
           gi|449326475|gb|AGE93057.1| RNA polymerase alpha subunit
           [Bismarckia nobilis]
          Length = 339

 Score =  123 bits (309), Expect(2) = 7e-47
 Identities = 59/63 (93%), Positives = 59/63 (93%)
 Frame = -3

Query: 314 TEPIDLCIELQIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 135
           TEPIDLCIELQIKRDRGYRMK   NSQDGSYPIDAV MPVRNANHSIHSYGNGNEKQEIL
Sbjct: 140 TEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEIL 199

Query: 134 FLE 126
           FLE
Sbjct: 200 FLE 202



 Score = 89.0 bits (219), Expect(2) = 7e-47
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -2

Query: 135 FSRIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEADINFEENKN 1
           F  IWTNGSLTPKEALYEASRNLIDLF+PFLHAEE DINFEENKN
Sbjct: 200 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKN 244


>gb|ABU85377.1| RNA polymerase alpha subunit [Elaeis oleifera]
          Length = 339

 Score =  123 bits (309), Expect(2) = 7e-47
 Identities = 59/63 (93%), Positives = 59/63 (93%)
 Frame = -3

Query: 314 TEPIDLCIELQIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEIL 135
           TEPIDLCIELQIKRDRGYRMK   NSQDGSYPIDAV MPVRNANHSIHSYGNGNEKQEIL
Sbjct: 140 TEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEIL 199

Query: 134 FLE 126
           FLE
Sbjct: 200 FLE 202



 Score = 89.0 bits (219), Expect(2) = 7e-47
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -2

Query: 135 FSRIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEADINFEENKN 1
           F  IWTNGSLTPKEALYEASRNLIDLF+PFLHAEE DINFEENKN
Sbjct: 200 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKN 244