BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026545
         (1348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   175   9e-83
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-78
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   168   4e-78
ref|XP_003573866.1| PREDICTED: general transcription factor IIH ...   164   3e-76
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   159   2e-74

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  175 bits (443), Expect(2) = 9e-83
 Identities = 98/185 (52%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
 Frame = -1

Query: 1237 LAP-PPKLYTDDVSLTVIILDTNPFFWGTLSNTSASNFSFSKFLNHMIPFXXXXXXXXXX 1061
            +AP P KLY+DDVSL V++LDTNPFFW T S        FSKFL+H++ F          
Sbjct: 1    MAPVPSKLYSDDVSLLVVLLDTNPFFWSTAS------LPFSKFLSHVLAFLNSILLINQL 54

Query: 1060 XXXXLIAAGVTSCGYIYDSATAVASDGGQ--KVPAVCSEILSCLEEFVAKDQKLGNGDLR 887
                +IA G  SC +I+DS++  A+   +  ++PA+CS +L  LEEFV  D+KL    L 
Sbjct: 55   NQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVL- 113

Query: 886  TVGGVMXXXXXXXXXXXLCYIQRVFRSGMQHPQPRILCLQGSPDGPEQYVAVMNAIFSAQ 707
               G+            LCYIQRVFR+G  HPQPRILCLQGSPDGPEQYVAVMNAIFSAQ
Sbjct: 114  -AAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQ 172

Query: 706  RSMVP 692
            RSMVP
Sbjct: 173  RSMVP 177



 Score =  160 bits (404), Expect(2) = 9e-83
 Identities = 75/98 (76%), Positives = 80/98 (81%), Gaps = 3/98 (3%)
 Frame = -3

Query: 569 GGVYLKPQQLDGLFEYFTAVFATDLQSRSFLQLPRPVGVDFRASCFCHKKTIDMGYVCSV 390
           GGVYLKPQQLDGLF+Y + VFATDL SR FLQLP+P GVDFRASCFCHK TIDMGY+CSV
Sbjct: 199 GGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSV 258

Query: 389 CLSIFCKPHKKCSTCGSDFSHSQ---NEQLDRKRKLSE 285
           CLSIFCK HKKCSTCGS F  +Q   N   DRKRK  E
Sbjct: 259 CLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTPE 296


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  166 bits (421), Expect(2) = 2e-78
 Identities = 91/175 (52%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
 Frame = -1

Query: 1210 DDVSLTVIILDTNPFFWGTLSNTSASNFSFSKFLNHMIPFXXXXXXXXXXXXXXLIAAGV 1031
            DDVSL V++LDTNPFFW     T  S+ SFS+FL+H++ F              +IA+G 
Sbjct: 2    DDVSLVVVLLDTNPFFW-----TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGY 56

Query: 1030 TSCGYIYDSATAVASDGGQ--KVPAVCSEILSCLEEFVAKDQKLGNGDLRTVGGVMXXXX 857
             +C YIYDS++  +  G +  ++P++ S +L  LEEF+ KD+KLG    +    +     
Sbjct: 57   NTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRA--IKSSLL 114

Query: 856  XXXXXXXLCYIQRVFRSGMQHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVP 692
                   LCYIQRVFRSG  HPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVP
Sbjct: 115  SGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVP 169



 Score =  154 bits (389), Expect(2) = 2e-78
 Identities = 72/98 (73%), Positives = 79/98 (80%), Gaps = 3/98 (3%)
 Frame = -3

Query: 569 GGVYLKPQQLDGLFEYFTAVFATDLQSRSFLQLPRPVGVDFRASCFCHKKTIDMGYVCSV 390
           GGVY+KPQ LDGLF+Y T VFATDL SRSF+QLPRP GVDFRASCFCHK TIDMGY+CSV
Sbjct: 191 GGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICSV 250

Query: 389 CLSIFCKPHKKCSTCGSDFSHSQNE---QLDRKRKLSE 285
           CLSIFC  HKKCSTCGS F  +Q++     D KRK  E
Sbjct: 251 CLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAPE 288


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  168 bits (425), Expect(2) = 4e-78
 Identities = 94/182 (51%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
 Frame = -1

Query: 1228 PPKLYTDDVSLTVIILDTNPFFWGTLSNTSASNFSFSKFLNHMIPFXXXXXXXXXXXXXX 1049
            P KLY DDVSL V++LDTNPFFW T      S   FSKFL+H++ F              
Sbjct: 5    PSKLYADDVSLLVVLLDTNPFFWST------SALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 1048 LIAAGVTSCGYIYDSATAV---ASDGGQKVPAVCSEILSCLEEFVAKDQKLGNGDLRTVG 878
            +I  G  SC Y+Y+S++       DG  ++PA+C+ +L  LEEFV  D++    D +  G
Sbjct: 59   VIGTGYASCKYLYNSSSYSNHGLEDG--RMPALCTRLLKNLEEFVIGDEQSIKEDPK--G 114

Query: 877  GVMXXXXXXXXXXXLCYIQRVFRSGMQHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 698
            G M           LCYIQ+VFRSG  HPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSM
Sbjct: 115  GTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174

Query: 697  VP 692
            VP
Sbjct: 175  VP 176



 Score =  151 bits (382), Expect(2) = 4e-78
 Identities = 72/93 (77%), Positives = 78/93 (83%)
 Frame = -3

Query: 569 GGVYLKPQQLDGLFEYFTAVFATDLQSRSFLQLPRPVGVDFRASCFCHKKTIDMGYVCSV 390
           GGVYLKPQQ+DGLF+Y + VF TDL SR+FLQLP+ VGVDFRASCFCHKKTIDMGYVCSV
Sbjct: 198 GGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 257

Query: 389 CLSIFCKPHKKCSTCGSDFSHSQNEQLDRKRKL 291
           CLSIFCK HKKCSTCGS F  +  E LD   KL
Sbjct: 258 CLSIFCKHHKKCSTCGSVFGETPVE-LDSVSKL 289


>ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
            [Brachypodium distachyon]
          Length = 290

 Score =  164 bits (416), Expect(2) = 3e-76
 Identities = 91/177 (51%), Positives = 110/177 (62%)
 Frame = -1

Query: 1222 KLYTDDVSLTVIILDTNPFFWGTLSNTSASNFSFSKFLNHMIPFXXXXXXXXXXXXXXLI 1043
            KLY+DDVSL V+I+DTNPFFW      + +   F+ F  H+I F              +I
Sbjct: 7    KLYSDDVSLVVVIVDTNPFFW------AGAALPFADFFGHLIHFVNSLLLLNHLNQVVVI 60

Query: 1042 AAGVTSCGYIYDSATAVASDGGQKVPAVCSEILSCLEEFVAKDQKLGNGDLRTVGGVMXX 863
            AAGV+SC Y++DS  A AS G   V A  ++    +EEFV +D +   G+    GG    
Sbjct: 61   AAGVSSCAYVFDSGNAAAS-GSPDVAATFAKASRKVEEFVKQDARDTAGNGTVAGGGAAS 119

Query: 862  XXXXXXXXXLCYIQRVFRSGMQHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVP 692
                     LCYIQRVFRSG +HPQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVP
Sbjct: 120  LFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVP 176



 Score =  148 bits (374), Expect(2) = 3e-76
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = -3

Query: 569 GGVYLKPQQLDGLFEYFTAVFATDLQSRSFLQLPRPVGVDFRASCFCHKKTIDMGYVCSV 390
           GGVYLKPQ+L GLF+Y  AVFA+DL SR+FL+LP+ +GVDFRASCFCHKKTIDMGYVCSV
Sbjct: 198 GGVYLKPQELSGLFQYLAAVFASDLHSRAFLRLPKTLGVDFRASCFCHKKTIDMGYVCSV 257

Query: 389 CLSIFCKPHKKCSTCGSDFS 330
           CLSIFCK HKKCSTCGS+FS
Sbjct: 258 CLSIFCKYHKKCSTCGSEFS 277


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  159 bits (401), Expect(2) = 2e-74
 Identities = 90/181 (49%), Positives = 110/181 (60%), Gaps = 4/181 (2%)
 Frame = -1

Query: 1222 KLYTDDVSLTVIILDTNPFFWGTLSNTSASNFSFSKFLNHMIPFXXXXXXXXXXXXXXLI 1043
            K Y+DDVSL V++LDTNP FW T S T      FS+FL+H++ F              +I
Sbjct: 7    KQYSDDVSLLVLLLDTNPLFWSTTSIT------FSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 1042 AAGVTSCGYIYDSATAVA----SDGGQKVPAVCSEILSCLEEFVAKDQKLGNGDLRTVGG 875
            A G +SC YIYDS+           G  +PA+   +L  LEEFV KD++L   ++ +   
Sbjct: 61   ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEV-SEDR 119

Query: 874  VMXXXXXXXXXXXLCYIQRVFRSGMQHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 695
            +            LCYIQRVFRSG  HPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MV
Sbjct: 120  IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179

Query: 694  P 692
            P
Sbjct: 180  P 180



 Score =  148 bits (373), Expect(2) = 2e-74
 Identities = 67/96 (69%), Positives = 79/96 (82%), Gaps = 4/96 (4%)
 Frame = -3

Query: 569 GGVYLKPQQLDGLFEYFTAVFATDLQSRSFLQLPRPVGVDFRASCFCHKKTIDMGYVCSV 390
           GGV+  P+QLDGLF+Y T +FATDL SR F+QLP+P+GVDFRASCFCHKKTIDMGY+CSV
Sbjct: 202 GGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSV 261

Query: 389 CLSIFCKPHKKCSTCGSDFSHSQ----NEQLDRKRK 294
           CLSIFC+ HKKCSTCGS F  S+    +   D+KRK
Sbjct: 262 CLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297