BLASTX nr result

ID: Dioscorea21_contig00026445 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026445
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565874.1| copper ion transmembrane transporter [Arabidops...    56   3e-06
ref|XP_003572631.1| PREDICTED: uncharacterized protein LOC100832...    55   5e-06
ref|XP_002881552.1| hypothetical protein ARALYDRAFT_321495 [Arab...    55   8e-06

>ref|NP_565874.1| copper ion transmembrane transporter [Arabidopsis thaliana]
           gi|21618236|gb|AAM67286.1| unknown [Arabidopsis
           thaliana] gi|330254371|gb|AEC09465.1| copper ion
           transmembrane transporter [Arabidopsis thaliana]
          Length = 251

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/47 (55%), Positives = 32/47 (68%)
 Frame = -2

Query: 195 NPRILSGSDQLRFPTLSFSPLREPRSLTIRMGGGPRTFPGGVSKWQW 55
           +P + S   +L   +L  SP +  +S  IRMGGGPRTFPGGVSKWQW
Sbjct: 20  SPDLNSLQSKLSLLSLKPSPTQPRKSTVIRMGGGPRTFPGGVSKWQW 66


>ref|XP_003572631.1| PREDICTED: uncharacterized protein LOC100832974 [Brachypodium
           distachyon]
          Length = 567

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/37 (70%), Positives = 28/37 (75%)
 Frame = -2

Query: 165 LRFPTLSFSPLREPRSLTIRMGGGPRTFPGGVSKWQW 55
           L FP+ +  PLR    L IRMGGGPRTFPGGVSKWQW
Sbjct: 18  LSFPSSTGRPLRRG-DLVIRMGGGPRTFPGGVSKWQW 53


>ref|XP_002881552.1| hypothetical protein ARALYDRAFT_321495 [Arabidopsis lyrata subsp.
           lyrata] gi|297327391|gb|EFH57811.1| hypothetical protein
           ARALYDRAFT_321495 [Arabidopsis lyrata subsp. lyrata]
          Length = 395

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/33 (75%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -2

Query: 150 LSFSPLREPRSLT-IRMGGGPRTFPGGVSKWQW 55
           LS  P  +PR  T IRMGGGPRTFPGGVSKWQW
Sbjct: 169 LSLKPSPQPRKSTVIRMGGGPRTFPGGVSKWQW 201


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