BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026297
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525826.1| Splicing factor 3B subunit, putative [Ricinu...   150   1e-34
ref|XP_002284022.1| PREDICTED: splicing factor 3B subunit 1-like...   147   1e-33
ref|XP_002323970.1| predicted protein [Populus trichocarpa] gi|2...   138   5e-31
ref|XP_003574558.1| PREDICTED: splicing factor 3B subunit 1 isof...   131   5e-29
ref|XP_003557702.1| PREDICTED: splicing factor 3B subunit 1-like...   130   8e-29

>ref|XP_002525826.1| Splicing factor 3B subunit, putative [Ricinus communis]
           gi|223534831|gb|EEF36520.1| Splicing factor 3B subunit,
           putative [Ricinus communis]
          Length = 1233

 Score =  150 bits (378), Expect = 1e-34
 Identities = 71/93 (76%), Positives = 76/93 (81%)
 Frame = +1

Query: 4   KVAAEVVAAPQKRRNRWDQSQEPEPEAKKPKSGSDWDAPDSTPGIGRWDATPTPGRVAAD 183
           K   E  A   KRRNRWDQSQ+    AKK KSGSDWD PD+TPGIGRWDATPTPGRV AD
Sbjct: 178 KEVKESGAVVSKRRNRWDQSQDEGGAAKKVKSGSDWDLPDATPGIGRWDATPTPGRV-AD 236

Query: 184 ATPSIARRNRWDETPTPGRLADADATPAGGVTP 282
           ATPS+ RRNRWDETPTPGR+ D+DATPAGGVTP
Sbjct: 237 ATPSVGRRNRWDETPTPGRVVDSDATPAGGVTP 269


>ref|XP_002284022.1| PREDICTED: splicing factor 3B subunit 1-like [Vitis vinifera]
          Length = 1271

 Score =  147 bits (370), Expect = 1e-33
 Identities = 72/84 (85%), Positives = 76/84 (90%), Gaps = 1/84 (1%)
 Frame = +1

Query: 34  QKRRNRWDQSQEPEPEAKKPKSGSDWDAPDSTPGIGRWDATPTPGRVAADATPSIARRNR 213
           QKRRNRWDQSQ+ +  AKK K+GSDWD PDSTPGIGRWDATPTPGRV ADATPSI+RRNR
Sbjct: 184 QKRRNRWDQSQD-DGSAKKAKTGSDWDLPDSTPGIGRWDATPTPGRV-ADATPSISRRNR 241

Query: 214 WDETPTPGRLADADATP-AGGVTP 282
           WDETPTPGRLADADATP AGG TP
Sbjct: 242 WDETPTPGRLADADATPAAGGATP 265


>ref|XP_002323970.1| predicted protein [Populus trichocarpa] gi|222866972|gb|EEF04103.1|
           predicted protein [Populus trichocarpa]
          Length = 1267

 Score =  138 bits (347), Expect = 5e-31
 Identities = 64/83 (77%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
 Frame = +1

Query: 37  KRRNRWDQSQEPEPEA-KKPKSGSDWDAPDSTPGIGRWDATPTPGRVAADATPSIARRNR 213
           KRRNRWDQS E    A KK K+GSDWD PD+TPGIGRWDATPTPGR+  DATP   R+NR
Sbjct: 180 KRRNRWDQSMEDGGNAAKKAKTGSDWDLPDATPGIGRWDATPTPGRIG-DATPGAGRKNR 238

Query: 214 WDETPTPGRLADADATPAGGVTP 282
           WDETPTPGR+AD+DATPAGGVTP
Sbjct: 239 WDETPTPGRVADSDATPAGGVTP 261


>ref|XP_003574558.1| PREDICTED: splicing factor 3B subunit 1 isoform 1 [Brachypodium
           distachyon] gi|357147949|ref|XP_003574559.1| PREDICTED:
           splicing factor 3B subunit 1 isoform 2 [Brachypodium
           distachyon] gi|357147951|ref|XP_003574560.1| PREDICTED:
           splicing factor 3B subunit 1 isoform 3 [Brachypodium
           distachyon]
          Length = 1279

 Score =  131 bits (330), Expect = 5e-29
 Identities = 69/97 (71%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
 Frame = +1

Query: 4   KVAAEVVAAPQKRRNRWDQSQEPEPEA---KKPKSGSDWDAPDSTPGIGRWDATPTPGRV 174
           K A E V A  KRRNRWDQSQ+ +  A   KK K+ SDWDAPD+TPGIGRWDA  TPGR+
Sbjct: 183 KAAPEPVPAATKRRNRWDQSQDGDTAAAGAKKAKTASDWDAPDATPGIGRWDA--TPGRI 240

Query: 175 AADATPSIARRNRWDETPTPGRLADADATP-AGGVTP 282
             DATPS+ RRNRWDETPTPGR+ADADATP AGG+TP
Sbjct: 241 -GDATPSV-RRNRWDETPTPGRMADADATPAAGGITP 275


>ref|XP_003557702.1| PREDICTED: splicing factor 3B subunit 1-like isoform 1
           [Brachypodium distachyon]
           gi|357111810|ref|XP_003557703.1| PREDICTED: splicing
           factor 3B subunit 1-like isoform 2 [Brachypodium
           distachyon] gi|357111812|ref|XP_003557704.1| PREDICTED:
           splicing factor 3B subunit 1-like isoform 3
           [Brachypodium distachyon]
          Length = 1276

 Score =  130 bits (328), Expect = 8e-29
 Identities = 69/97 (71%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
 Frame = +1

Query: 4   KVAAEVVAAPQKRRNRWDQSQEPEPEA---KKPKSGSDWDAPDSTPGIGRWDATPTPGRV 174
           K A E + A  KRRNRWDQSQ+ +  A   KK K+ SDWDAPD+TPGIGRWDA  TPGRV
Sbjct: 180 KAAPEPLPAATKRRNRWDQSQDGDAAAAGAKKAKTASDWDAPDATPGIGRWDA--TPGRV 237

Query: 175 AADATPSIARRNRWDETPTPGRLADADATP-AGGVTP 282
             DATPS+ RRNRWDETPTPGR+ADADATP AGG+TP
Sbjct: 238 -GDATPSV-RRNRWDETPTPGRMADADATPAAGGITP 272