BLASTX nr result

ID: Dioscorea21_contig00026202 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00026202
         (972 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containi...   317   4e-84
emb|CBI36234.3| unnamed protein product [Vitis vinifera]              307   2e-81
ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containi...   300   3e-79
ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   298   1e-78
ref|XP_002303270.1| predicted protein [Populus trichocarpa] gi|2...   298   2e-78

>ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
            chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  317 bits (811), Expect = 4e-84
 Identities = 143/202 (70%), Positives = 168/202 (83%)
 Frame = -2

Query: 971  WGALLNGCRIHRQVDLGELAANYLFELDTQSTGYYVLLCNLYANSDRWDQVARVRKEMRE 792
            WGALLN CRI++ V+LGELAA ++FE+DT+S GYY+LLCNLYA+S +WD+VARVRK MRE
Sbjct: 668  WGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRE 727

Query: 791  RGLTIDPGCSWVEVKGMVHAFLSGDESHPQSKEINGALNGLYERIKSAGFDLPDNDMVDK 612
              LT+DPGCSWVEV G VHAFL+GD+ HPQ KEIN  L G YE++++ G  +  +   D 
Sbjct: 728  NRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDD 787

Query: 611  AEASKAEIFCGHSERLAIAFGLISTAPGTAIWVTKNLYMCQGCHALVKSISKIVRREITV 432
             +ASKAEIFCGHSERLAIAFGLI+T PGT IWVTKNLYMC+ CH  VK ISK+VRR I+V
Sbjct: 788  IDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISV 847

Query: 431  RDTEQFHHFKDGKCSCGDEGYW 366
            RDTEQFHHFKDG CSCGDEGYW
Sbjct: 848  RDTEQFHHFKDGVCSCGDEGYW 869


>emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  307 bits (787), Expect = 2e-81
 Identities = 140/199 (70%), Positives = 165/199 (82%)
 Frame = -2

Query: 971  WGALLNGCRIHRQVDLGELAANYLFELDTQSTGYYVLLCNLYANSDRWDQVARVRKEMRE 792
            WGALLN CRI++ V+LGELAA ++FE+DT+S GYY+LLCNLYA+S +WD+VARVRK MRE
Sbjct: 668  WGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRE 727

Query: 791  RGLTIDPGCSWVEVKGMVHAFLSGDESHPQSKEINGALNGLYERIKSAGFDLPDNDMVDK 612
              LT+DPGCSWVEV G VHAFL+GD+ HPQ KEIN  L G YE++++ G  +  +   D 
Sbjct: 728  NRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDD 787

Query: 611  AEASKAEIFCGHSERLAIAFGLISTAPGTAIWVTKNLYMCQGCHALVKSISKIVRREITV 432
             +ASKAEIFCGHSERLAIAFGLI+T PGT IWVTKNLYMC+ CH  VK ISK+VRR I+V
Sbjct: 788  IDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISV 847

Query: 431  RDTEQFHHFKDGKCSCGDE 375
            RDTEQFHHFKDG CSCGDE
Sbjct: 848  RDTEQFHHFKDGVCSCGDE 866


>ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
            chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  300 bits (769), Expect = 3e-79
 Identities = 137/202 (67%), Positives = 160/202 (79%)
 Frame = -2

Query: 971  WGALLNGCRIHRQVDLGELAANYLFELDTQSTGYYVLLCNLYANSDRWDQVARVRKEMRE 792
            WGALLN CRIHR V+LGE+AA  +FE D +S GYY+LLCNLYA    WD+V++VR  MRE
Sbjct: 671  WGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRE 730

Query: 791  RGLTIDPGCSWVEVKGMVHAFLSGDESHPQSKEINGALNGLYERIKSAGFDLPDNDMVDK 612
            RGL+ DPGCSWVE+KG VHAFLSGD SH QSKEING L+G   ++K  GF    +    +
Sbjct: 731  RGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSE 790

Query: 611  AEASKAEIFCGHSERLAIAFGLISTAPGTAIWVTKNLYMCQGCHALVKSISKIVRREITV 432
             E+S+A+IFCGHSER AIAFGLI+TAPG  IWVTKNLYMC  CH +VK IS IVRREI+V
Sbjct: 791  IESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISV 850

Query: 431  RDTEQFHHFKDGKCSCGDEGYW 366
            RD E++HHFKDG CSCGDEGYW
Sbjct: 851  RDVEEYHHFKDGVCSCGDEGYW 872


>ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  298 bits (763), Expect = 1e-78
 Identities = 136/202 (67%), Positives = 159/202 (78%)
 Frame = -2

Query: 971  WGALLNGCRIHRQVDLGELAANYLFELDTQSTGYYVLLCNLYANSDRWDQVARVRKEMRE 792
            WGALLN CRIHR V+LGE+AA  +FE D +S GYY+LLCNLYA    WD+V++VR  MRE
Sbjct: 671  WGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRE 730

Query: 791  RGLTIDPGCSWVEVKGMVHAFLSGDESHPQSKEINGALNGLYERIKSAGFDLPDNDMVDK 612
            RGL+ DPGCSWVE+KG VHAFLSGD SH QSKEING L+G   ++K  GF    +    +
Sbjct: 731  RGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSE 790

Query: 611  AEASKAEIFCGHSERLAIAFGLISTAPGTAIWVTKNLYMCQGCHALVKSISKIVRREITV 432
             E+S+A+IFCGHSER AIAFGLI+TAPG  IWV KNLYMC  CH +VK IS IVRREI+V
Sbjct: 791  IESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISV 850

Query: 431  RDTEQFHHFKDGKCSCGDEGYW 366
            RD E++HHFKDG CSCGDEGYW
Sbjct: 851  RDVEEYHHFKDGVCSCGDEGYW 872


>ref|XP_002303270.1| predicted protein [Populus trichocarpa] gi|222840702|gb|EEE78249.1|
            predicted protein [Populus trichocarpa]
          Length = 805

 Score =  298 bits (762), Expect = 2e-78
 Identities = 136/198 (68%), Positives = 163/198 (82%)
 Frame = -2

Query: 971  WGALLNGCRIHRQVDLGELAANYLFELDTQSTGYYVLLCNLYANSDRWDQVARVRKEMRE 792
            WGALLN CRIHR V LGELAA ++F+ D +S GYY+LLCNLYA+S +WD+VA+VR+ M+E
Sbjct: 608  WGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKE 667

Query: 791  RGLTIDPGCSWVEVKGMVHAFLSGDESHPQSKEINGALNGLYERIKSAGFDLPDNDMVDK 612
             GL +DPGCSWVEVKG VHAFLSGD  HPQ +EIN  L G YE++K++GF+  +   +D 
Sbjct: 668  EGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDG 727

Query: 611  AEASKAEIFCGHSERLAIAFGLISTAPGTAIWVTKNLYMCQGCHALVKSISKIVRREITV 432
             + SKA+IFCGHSER AIA+ LI++APG  IWVTKNLYMCQ CH+ VK ISKIVRREI+V
Sbjct: 728  IQTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISV 787

Query: 431  RDTEQFHHFKDGKCSCGD 378
            RDTEQFHHFKDG CSCGD
Sbjct: 788  RDTEQFHHFKDGLCSCGD 805


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