BLASTX nr result

ID: Dioscorea21_contig00025380 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025380
         (653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514989.1| conserved hypothetical protein [Ricinus comm...   124   2e-26
ref|XP_002315625.1| predicted protein [Populus trichocarpa] gi|2...   117   2e-24
ref|XP_002312638.1| predicted protein [Populus trichocarpa] gi|2...   117   2e-24
ref|XP_003631322.1| PREDICTED: uncharacterized protein LOC100853...   113   4e-23
ref|NP_001149742.1| DNA binding protein [Zea mays] gi|195630481|...    99   9e-19

>ref|XP_002514989.1| conserved hypothetical protein [Ricinus communis]
           gi|223546040|gb|EEF47543.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 358

 Score =  124 bits (311), Expect = 2e-26
 Identities = 79/172 (45%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
 Frame = -3

Query: 498 MMSGEEKACYEIGSAAQENQSTTNSYTFEFHXXXXXXXXXXXK-----PTPSKWDDAQKW 334
           M S E+K CY  G    +  ST++  +FEFH           +     PTPSKWDDAQKW
Sbjct: 1   MRSIEDKGCYNHGPI--QEISTSHGISFEFHKGNGANRTSHHRTALGKPTPSKWDDAQKW 58

Query: 333 LVGLSTSRDXXXXXXXXXXXXXXXXXNADDRRLLSSQSQKGRDSCSSLDGILGDYSSVPI 154
           LVGLS   D                 NADDRRL++   Q+ RD  S  D + G+      
Sbjct: 59  LVGLSRGGD--------KNQSKPRNSNADDRRLIAPVPQQERDYLSGGDDVEGEE----- 105

Query: 153 ANNPQDDGETKKIDCNETMWRINKPVDDSSLT-VRSVCVRDMGTEMTPIASQ 1
           AN   D  ETKK+DC+E +WRINK V +S+ + VRS+CVRDMGTEMTPIASQ
Sbjct: 106 ANGWPDSTETKKVDCDEPIWRINKTVQNSTASAVRSICVRDMGTEMTPIASQ 157


>ref|XP_002315625.1| predicted protein [Populus trichocarpa] gi|222864665|gb|EEF01796.1|
           predicted protein [Populus trichocarpa]
          Length = 351

 Score =  117 bits (293), Expect = 2e-24
 Identities = 75/171 (43%), Positives = 95/171 (55%), Gaps = 9/171 (5%)
 Frame = -3

Query: 486 EEKACYEIGSAAQENQSTTNSYTFEFHXXXXXXXXXXXK-----PTPSKWDDAQKWLVGL 322
           E+K CY  G   +   S   S  FEFH           +     PTPSKWDDAQKWLVGL
Sbjct: 2   EDKGCYNHGPTQEIPSSKATS--FEFHKGNGASRGGHHRTALGKPTPSKWDDAQKWLVGL 59

Query: 321 STSRDXXXXXXXXXXXXXXXXXNADDRRLLSSQSQKGRDSCSSLDGILGDYS---SVPIA 151
           S                     NADDRRL++   Q   D  S  D + G+ +   S+ I 
Sbjct: 60  SRG------GGGDRKESQPRNSNADDRRLIAPVPQMEHDYSSGEDEVGGEAANGCSISIT 113

Query: 150 NNPQDDGETKKIDCNETMWRINKPVDDSSLT-VRSVCVRDMGTEMTPIASQ 1
           N  Q + ETKK+DC+E++WR+NKP  +S+++ VRS+CVRDMGTEMTPIASQ
Sbjct: 114 N--QYEVETKKVDCDESVWRVNKPAQNSTMSAVRSICVRDMGTEMTPIASQ 162


>ref|XP_002312638.1| predicted protein [Populus trichocarpa] gi|222852458|gb|EEE90005.1|
           predicted protein [Populus trichocarpa]
          Length = 366

 Score =  117 bits (293), Expect = 2e-24
 Identities = 77/175 (44%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
 Frame = -3

Query: 498 MMSGEEKACYEIGSAAQENQSTTNSYTFEFHXXXXXXXXXXXK-----PTPSKWDDAQKW 334
           M S E+K CY  G    +  S+ N+ +FEFH           +     PTPSKWDDAQKW
Sbjct: 1   MRSVEDKGCYNHGPT--QEISSGNAISFEFHKGNGASRSGHHRTALGKPTPSKWDDAQKW 58

Query: 333 LVGLSTSRDXXXXXXXXXXXXXXXXXNADDRRLLSSQSQKGRDSCSSLDGILG---DYSS 163
           LVGLS                     NADDRRL++   Q  ++  S  D + G   +  S
Sbjct: 59  LVGLSRG------GGGDKKESKPRNSNADDRRLIAPVPQMEQEYSSGEDEVEGKAENGCS 112

Query: 162 VPIANNPQDDGETKKIDCNETMWRINKPVDDSSL-TVRSVCVRDMGTEMTPIASQ 1
           + I N  Q + ETK +DC+E++WRINKP  +S++  VRSVCVRDMGTEMTPIASQ
Sbjct: 113 ISIIN--QYEVETKNVDCDESVWRINKPAQNSTMNAVRSVCVRDMGTEMTPIASQ 165


>ref|XP_003631322.1| PREDICTED: uncharacterized protein LOC100853782 [Vitis vinifera]
          Length = 359

 Score =  113 bits (282), Expect = 4e-23
 Identities = 72/172 (41%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
 Frame = -3

Query: 498 MMSGEEKACYEIGSAAQENQSTTNSYTFEFHXXXXXXXXXXXK-----PTPSKWDDAQKW 334
           M S E+K C   G    ++ S++++ +FEF            +     PTPSKWDDAQKW
Sbjct: 1   MRSIEDKGCCNYGPT--KDISSSSAISFEFPKGNGTNRTTHHRTALGKPTPSKWDDAQKW 58

Query: 333 LVGLSTSRDXXXXXXXXXXXXXXXXXNADDRRLLSSQSQKGRDSCSSLDGILGDYSSVP- 157
           LVGLS   +                  ADDRRL++   QK +D  S  D    + +  P 
Sbjct: 59  LVGLSGGGEKNQSKTKPRNSN------ADDRRLIAPVPQKEKDYSSCEDEGEEEANGCPG 112

Query: 156 IANNPQDDGETKKIDCNETMWRINKPVDDSSLTVRSVCVRDMGTEMTPIASQ 1
            A++ Q   ETKK+DC+E+ W+INK  +DSS  VRS+CVRDMGTEMTPI+SQ
Sbjct: 113 PASSNQYQVETKKVDCDESFWQINKASEDSSSAVRSICVRDMGTEMTPISSQ 164


>ref|NP_001149742.1| DNA binding protein [Zea mays] gi|195630481|gb|ACG36634.1| DNA
           binding protein [Zea mays] gi|413922707|gb|AFW62639.1|
           DNA binding protein isoform 1 [Zea mays]
           gi|413922708|gb|AFW62640.1| DNA binding protein isoform
           2 [Zea mays] gi|413922709|gb|AFW62641.1| DNA binding
           protein isoform 3 [Zea mays]
          Length = 339

 Score = 98.6 bits (244), Expect = 9e-19
 Identities = 66/130 (50%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
 Frame = -3

Query: 366 TPSKWDDAQKWLVGLSTSRDXXXXXXXXXXXXXXXXXNADDRRLLSSQSQKGRDSCSSLD 187
           TPSKWDDAQKWLVG+S                     NADDRRLL S SQ GR SCSS+D
Sbjct: 29  TPSKWDDAQKWLVGMSNGH----ADGTHGARVKPRSSNADDRRLLGSASQNGRVSCSSVD 84

Query: 186 GILGDYSSVPIANN--PQ------DDGETKKIDCNETMWRINKPVDDSSLTVRSVCVRDM 31
           G L +YS V  A +  PQ      D  ETKKIDC   +       D     +RSVC+RDM
Sbjct: 85  GAL-EYSMVVAAPSTPPQAAEGGGDMEETKKIDCMVQLH------DSPQAVMRSVCLRDM 137

Query: 30  GTEMTPIASQ 1
           GTEMTPIAS+
Sbjct: 138 GTEMTPIASK 147


Top