BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025360
         (1184 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containi...   543   e-152
ref|XP_002511477.1| pentatricopeptide repeat-containing protein,...   537   e-150
ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containi...   532   e-149
ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis...   531   e-148
ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containi...   530   e-148

>ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
            chloroplastic [Vitis vinifera]
          Length = 869

 Score =  543 bits (1399), Expect = e-152
 Identities = 270/402 (67%), Positives = 321/402 (79%), Gaps = 8/402 (1%)
 Frame = -1

Query: 1184 HLHLHPRFLCNLTTAPSPKSRY--------ATASSRSKTKELVLGTPTITLEKGKYSYDV 1029
            H++L P    N    P+  + +        + A  R+K KELVLG P++T+EKGKYSYDV
Sbjct: 22   HVNLRPNPNLNRHLFPAKATDFFGYQRILASAARIRAKPKELVLGNPSVTVEKGKYSYDV 81

Query: 1028 ETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRGDWQRSLRLFKYMQRQSW 849
            ETLINKLSSLPPRGSIARCL+ F+N+LSL+DFA+VFKEFA+RGDWQRSLRLFKYMQRQ W
Sbjct: 82   ETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIW 141

Query: 848  CRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGFHERAL 669
            C+PNEHI+ I+IGVLGRE LLEK  E+FDEMP+H V  S  S+TA+INAYGRNG ++ +L
Sbjct: 142  CKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSL 201

Query: 668  ELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHNTLLAA 489
            ELL  MK ER+ PS LTYNTVIN+CARGG+ W+ LLGLFA+MRH+G Q DIVT+NTLL+A
Sbjct: 202  ELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSA 261

Query: 488  AGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEASGHLPD 309
               RGL D+AEMVFRTM E GI PD TTYSYLVETF KL +L +V+ELL EME+ G  PD
Sbjct: 262  CARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPD 321

Query: 308  ASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDVRELFL 129
             ++YNVL++          A+ V RQMQ AGC PNAATYSILL LYGR+G+Y+DVR+LFL
Sbjct: 322  ITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFL 381

Query: 128  EMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
            EMKV NT P+A+TYNILI VFGEGGYFKEVVTLF+DMVEENV
Sbjct: 382  EMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENV 423



 Score =  135 bits (341), Expect = 2e-29
 Identities = 91/347 (26%), Positives = 161/347 (46%)
 Frame = -1

Query: 1043 YSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRGDWQRSLRLFKYM 864
            YSY VET   KL+ L     + + +ES  +   ++ + V+ +  A+ G  + ++ +F+ M
Sbjct: 290  YSYLVETF-GKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 348

Query: 863  QRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGF 684
            Q    C PN   ++IL+ + GR    +   ++F EM       +A +Y  +IN +G  G+
Sbjct: 349  QGAG-CVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY 407

Query: 683  HERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHN 504
             +  + L  +M  E + P+  TY  +I AC +GG+  DA   +   M   G  P    + 
Sbjct: 408  FKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKK-ILLHMNEKGVVPSSKAYT 466

Query: 503  TLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEAS 324
             ++ A G   L ++A + F TM E G  P   TY+ L++ FAK G       +L +M  S
Sbjct: 467  GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 526

Query: 323  GHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDV 144
            G   +   +N +++          A+    +M+ A C P+  T   +L +Y   G  E+ 
Sbjct: 527  GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 586

Query: 143  RELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
             E F E+K     P    Y +++ V+ +   + +   L ++M    V
Sbjct: 587  EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRV 633



 Score =  118 bits (296), Expect = 3e-24
 Identities = 74/298 (24%), Positives = 140/298 (46%)
 Frame = -1

Query: 911  ARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRS 732
            ARRG    +  +F+ M  +    P+   ++ L+   G+ + LEK +E+  EM +      
Sbjct: 263  ARRGLGDEAEMVFRTMN-EGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPD 321

Query: 731  ALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLF 552
              SY  ++ A+ ++G  + A+ +   M+     P+  TY+ ++N   R G  +D +  LF
Sbjct: 322  ITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHG-RYDDVRDLF 380

Query: 551  AEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKL 372
             EM+    +P+  T+N L+   G  G   +   +F  M+E  + P+  TY  L+    K 
Sbjct: 381  LEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKG 440

Query: 371  GQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATY 192
            G      ++L  M   G +P + AY  +++          A+     M   G  P   TY
Sbjct: 441  GLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETY 500

Query: 191  SILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDM 18
            + L++++ + G Y++   + L+M     A +  T+N +I+ F +GG F+E +  + +M
Sbjct: 501  NSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEM 558



 Score =  114 bits (284), Expect = 6e-23
 Identities = 72/310 (23%), Positives = 145/310 (46%), Gaps = 1/310 (0%)
 Frame = -1

Query: 944  LSDFAVVFKEFARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVF 765
            ++ ++ + + F +    ++   L K M+      P+   + +L+    +   +++A  VF
Sbjct: 287  ITTYSYLVETFGKLNRLEKVSELLKEME-SGGSFPDITSYNVLLEAHAQSGSIKEAMGVF 345

Query: 764  DEMP-AHCVPRSALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACAR 588
             +M  A CVP +A +Y+ ++N YGR+G ++   +L   MK     P+  TYN +IN    
Sbjct: 346  RQMQGAGCVPNAA-TYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGE 404

Query: 587  GGVPWDALLGLFAEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYT 408
            GG  +  ++ LF +M  +  +P++ T+  L+ A G  GL + A+ +   M E G+ P   
Sbjct: 405  GGY-FKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSK 463

Query: 407  TYSYLVETFAKLGQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQM 228
             Y+ ++E + +             M   G  P    YN L+           +  +L +M
Sbjct: 464  AYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 523

Query: 227  QAAGCTPNAATYSILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYF 48
              +G   N  T++ +++ + + GQ+E+  + ++EM+     PD  T   ++ V+   G  
Sbjct: 524  GQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLV 583

Query: 47   KEVVTLFNDM 18
            +E    F ++
Sbjct: 584  EESEEQFGEI 593


>ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550592|gb|EEF52079.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 754

 Score =  537 bits (1383), Expect = e-150
 Identities = 261/376 (69%), Positives = 311/376 (82%)
 Frame = -1

Query: 1130 KSRYATASSRSKTKELVLGTPTITLEKGKYSYDVETLINKLSSLPPRGSIARCLESFRNR 951
            K+    A +R+KTKELVLG P++ +EKGKYSYDVETLINKLSSLPPRGSIARCLE F+N+
Sbjct: 44   KTYSGAAKARAKTKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNK 103

Query: 950  LSLSDFAVVFKEFARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANE 771
            LSL+DFA+VFKEFA+RGDWQRSLRLFKYMQRQ WC+PNEHI+ I+I +LGRE LLEK+ E
Sbjct: 104  LSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTE 163

Query: 770  VFDEMPAHCVPRSALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACA 591
            +F+EMP H VPRS  SYTA+IN+YGR+G +E +LELL  MK E++ PS LTYNTVIN+CA
Sbjct: 164  IFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCA 223

Query: 590  RGGVPWDALLGLFAEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDY 411
            RGG+ W+ LL LFAEMRH+G QPDI+T+NTLL A  +RGL D+AEMVFRTM E G+ PD 
Sbjct: 224  RGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDI 283

Query: 410  TTYSYLVETFAKLGQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQ 231
            TTY  LVETF KL +L +V+ELL EME+SG+LPD S+YNVL++          A+ V RQ
Sbjct: 284  TTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQ 343

Query: 230  MQAAGCTPNAATYSILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGY 51
            MQ A C PNA TYS+LL LYG +G+Y+DVRELFLEMKV NT PD  TYN+LI+VFGEGGY
Sbjct: 344  MQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGY 403

Query: 50   FKEVVTLFNDMVEENV 3
            FKEVVTLF+DMVEENV
Sbjct: 404  FKEVVTLFHDMVEENV 419



 Score =  129 bits (324), Expect = 1e-27
 Identities = 85/359 (23%), Positives = 163/359 (45%), Gaps = 6/359 (1%)
 Frame = -1

Query: 1061 TLEKGKYSYDVETLIN------KLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRG 900
            T+ +G    D+ T  N      KL+ L     + + +ES  N   +S + V+ + +A +G
Sbjct: 273  TMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKG 332

Query: 899  DWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSY 720
            D + ++ +F+ MQ ++ C PN   +++L+ + G     +   E+F EM          +Y
Sbjct: 333  DIRHAMGVFRQMQ-EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTY 391

Query: 719  TAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMR 540
              +I  +G  G+ +  + L  +M  E + P+  TY  +I AC +GG+  DA   +   M 
Sbjct: 392  NVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKK-ILLHMD 450

Query: 539  HDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLG 360
              G  P    +  ++ A G     ++A ++F TM E G  P   TY+ L+  FA+ G   
Sbjct: 451  EKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYK 510

Query: 359  RVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILL 180
                ++ +M  SG   D  ++N +++          A+    +++ A   P+  T+  +L
Sbjct: 511  ESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVL 570

Query: 179  KLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
             +Y   G  ++  E F E++     P    Y ++I V+     + +   + ++MV   V
Sbjct: 571  SVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKV 629



 Score =  113 bits (283), Expect = 8e-23
 Identities = 73/298 (24%), Positives = 135/298 (45%)
 Frame = -1

Query: 911  ARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRS 732
            A RG    +  +F+ M       P+   +  L+   G+ + LEK +E+  EM +      
Sbjct: 259  ANRGLGDEAEMVFRTMNEGGMV-PDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPD 317

Query: 731  ALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLF 552
              SY  ++ AY   G    A+ +   M+  R  P+ +TY+ ++N     G  +D +  LF
Sbjct: 318  ISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHG-RYDDVRELF 376

Query: 551  AEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKL 372
             EM+    +PD+ T+N L+   G  G   +   +F  M+E  + P+  TY  L+    K 
Sbjct: 377  LEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKG 436

Query: 371  GQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATY 192
            G      ++L  M+  G +P   AY  +++          A+ +   M   G  P   TY
Sbjct: 437  GLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETY 496

Query: 191  SILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDM 18
            + L+ ++ R G Y++   +  +M     A D  ++N +I+ + +GG F+E +  + ++
Sbjct: 497  NSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVEL 554


>ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
            chloroplastic-like [Glycine max]
          Length = 857

 Score =  532 bits (1371), Expect = e-149
 Identities = 259/379 (68%), Positives = 309/379 (81%)
 Frame = -1

Query: 1139 PSPKSRYATASSRSKTKELVLGTPTITLEKGKYSYDVETLINKLSSLPPRGSIARCLESF 960
            PSPK R    +  +K   L+   P++T+EKGKYSYDVETLIN+L++LPPRGSIARCL+ F
Sbjct: 33   PSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPF 92

Query: 959  RNRLSLSDFAVVFKEFARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEK 780
            +N+LSL+DFA+VFKEFA+RGDWQRSLRLFKYMQRQ WC+PNEHIH I+I +LGRE LL+K
Sbjct: 93   KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDK 152

Query: 779  ANEVFDEMPAHCVPRSALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVIN 600
              EVFDEMP++ V R+  SYTAIINAYGRNG    +LELL+ MK ER+ PS LTYNTVIN
Sbjct: 153  CREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN 212

Query: 599  ACARGGVPWDALLGLFAEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIF 420
            ACARGG+ W+ LLGLFAEMRH+G QPD++T+NTLL A   RGL D+AEMVFRTM E+GI 
Sbjct: 213  ACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIV 272

Query: 419  PDYTTYSYLVETFAKLGQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNV 240
            PD  TYSYLV+TF KL +L +V+ELL EME  G+LPD ++YNVL++          A+ V
Sbjct: 273  PDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGV 332

Query: 239  LRQMQAAGCTPNAATYSILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGE 60
             RQMQAAGC  NAATYS+LL LYG++G+Y+DVR+LFLEMKV NT PDA TYNILIQVFGE
Sbjct: 333  FRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGE 392

Query: 59   GGYFKEVVTLFNDMVEENV 3
            GGYFKEVVTLF+DM EENV
Sbjct: 393  GGYFKEVVTLFHDMAEENV 411



 Score =  136 bits (342), Expect = 1e-29
 Identities = 87/347 (25%), Positives = 156/347 (44%)
 Frame = -1

Query: 1043 YSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRGDWQRSLRLFKYM 864
            YSY V+T   KL+ L     + R +E   N   ++ + V+ + +A  G  + ++ +F+ M
Sbjct: 278  YSYLVQTF-GKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQM 336

Query: 863  QRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGF 684
            Q    C  N   +++L+ + G+    +   ++F EM        A +Y  +I  +G  G+
Sbjct: 337  QAAG-CVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGY 395

Query: 683  HERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHN 504
             +  + L  +M  E + P+  TY  +I AC +GG+  DA   +   M   G  P    + 
Sbjct: 396  FKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKK-ILLHMNEKGVVPSSKAYT 454

Query: 503  TLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEAS 324
             ++ A G   L ++A ++F TM E G  P   TY+ L+  FA+ G       +L  M  S
Sbjct: 455  GVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES 514

Query: 323  GHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDV 144
            G   D  ++N +++          AV    +M+ A C PN  T   +L +Y   G  ++ 
Sbjct: 515  GLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEG 574

Query: 143  RELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
             E F E+K     P    Y +++ ++ +     +   L + M+   V
Sbjct: 575  EEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMRV 621



 Score =  113 bits (283), Expect = 8e-23
 Identities = 75/302 (24%), Positives = 134/302 (44%)
 Frame = -1

Query: 911  ARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRS 732
            A RG    +  +F+ M  +S   P+ + ++ L+   G+ + LEK +E+  EM        
Sbjct: 251  AHRGLGDEAEMVFRTMN-ESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPD 309

Query: 731  ALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLF 552
              SY  ++ AY   G  + A+ +   M+A     +  TY+ ++N   + G  +D +  LF
Sbjct: 310  ITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHG-RYDDVRDLF 368

Query: 551  AEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKL 372
             EM+     PD  T+N L+   G  G   +   +F  M E  + P+  TY  L+    K 
Sbjct: 369  LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKG 428

Query: 371  GQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATY 192
            G      ++L  M   G +P + AY  +++          A+ +   M   G  P   TY
Sbjct: 429  GLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETY 488

Query: 191  SILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVE 12
            + L+  + R G Y++   +   M       D  ++N +I+ F +GG ++E V  + +M +
Sbjct: 489  NSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEK 548

Query: 11   EN 6
             N
Sbjct: 549  AN 550


>ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
            gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g74850, chloroplastic; AltName: Full=Protein PLASTID
            TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
            gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535
            DUF17 domains [Arabidopsis thaliana]
            gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical
            protein; 81052-84129 [Arabidopsis thaliana]
            gi|332197518|gb|AEE35639.1| plastid transcriptionally
            active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  531 bits (1368), Expect = e-148
 Identities = 258/367 (70%), Positives = 309/367 (84%)
 Frame = -1

Query: 1103 RSKTKELVLGTPTITLEKGKYSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVV 924
            ++KTK+LVLG P++++EKGKYSYDVE+LINKLSSLPPRGSIARCL+ F+N+LSL+DFA+V
Sbjct: 52   KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALV 111

Query: 923  FKEFARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHC 744
            FKEFA RGDWQRSLRLFKYMQRQ WC+PNEHI+ I+I +LGRE LL+K  EVFDEMP+  
Sbjct: 112  FKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQG 171

Query: 743  VPRSALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDAL 564
            V RS  SYTA+INAYGRNG +E +LELL  MK E+I PS LTYNTVINACARGG+ W+ L
Sbjct: 172  VSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGL 231

Query: 563  LGLFAEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVET 384
            LGLFAEMRH+G QPDIVT+NTLL+A   RGL D+AEMVFRTM + GI PD TTYS+LVET
Sbjct: 232  LGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVET 291

Query: 383  FAKLGQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPN 204
            F KL +L +V +LLGEM + G LPD ++YNVL++          A+ V  QMQAAGCTPN
Sbjct: 292  FGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPN 351

Query: 203  AATYSILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFN 24
            A TYS+LL L+G++G+Y+DVR+LFLEMK  NT PDA+TYNILI+VFGEGGYFKEVVTLF+
Sbjct: 352  ANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFH 411

Query: 23   DMVEENV 3
            DMVEEN+
Sbjct: 412  DMVEENI 418



 Score =  124 bits (310), Expect = 6e-26
 Identities = 85/347 (24%), Positives = 157/347 (45%)
 Frame = -1

Query: 1043 YSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRGDWQRSLRLFKYM 864
            YS+ VET   KL  L     +   + S  +   ++ + V+ + +A+ G  + ++ +F  M
Sbjct: 285  YSHLVETF-GKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343

Query: 863  QRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGF 684
            Q    C PN + +++L+ + G+    +   ++F EM +      A +Y  +I  +G  G+
Sbjct: 344  QAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query: 683  HERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHN 504
             +  + L  +M  E I P   TY  +I AC +GG+  DA   +   M  +   P    + 
Sbjct: 403  FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARK-ILQYMTANDIVPSSKAYT 461

Query: 503  TLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEAS 324
             ++ A G   L ++A + F TM E G  P   T+  L+ +FA+ G +     +L  +  S
Sbjct: 462  GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 323  GHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDV 144
            G   +   +N  ++          AV     M+ + C P+  T   +L +Y      ++ 
Sbjct: 522  GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 143  RELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
            RE F EMK  +  P    Y +++ V+G+   + +V  L  +M+   V
Sbjct: 582  REQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score =  105 bits (262), Expect = 2e-20
 Identities = 68/275 (24%), Positives = 122/275 (44%)
 Frame = -1

Query: 842  PNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGFHERALEL 663
            P+   ++ L+   G+   LEK  ++  EM +        SY  ++ AY ++G  + A+ +
Sbjct: 280  PDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGV 339

Query: 662  LSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHNTLLAAAG 483
               M+A    P+  TY+ ++N   + G  +D +  LF EM+     PD  T+N L+   G
Sbjct: 340  FHQMQAAGCTPNANTYSVLLNLFGQSG-RYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398

Query: 482  SRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEASGHLPDAS 303
              G   +   +F  M+E  I PD  TY  ++    K G      ++L  M A+  +P + 
Sbjct: 399  EGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458

Query: 302  AYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDVRELFLEM 123
            AY  +++          A+     M   G  P+  T+  LL  + R G  ++   +   +
Sbjct: 459  AYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRL 518

Query: 122  KVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDM 18
                   +  T+N  I+ + +GG F+E V  + DM
Sbjct: 519  VDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM 553


>ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
            chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  530 bits (1366), Expect = e-148
 Identities = 254/367 (69%), Positives = 311/367 (84%)
 Frame = -1

Query: 1103 RSKTKELVLGTPTITLEKGKYSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVV 924
            R+K K+LVLG P++ +EKGKYSYDVETLINKLSSLPPRGSIARCL+ F+NRLSL+DF++V
Sbjct: 59   RAKAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLV 118

Query: 923  FKEFARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHC 744
            FKEFA RGDWQRSLRLFKYMQRQ WC+PNEHI+ I+I +LGRE LLEK +E+FDEM +  
Sbjct: 119  FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQG 178

Query: 743  VPRSALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDAL 564
            V RS  SYTA+INAYGRNG +E +LELL  MK ER+ P+ LTYNTVINACARG + W+ L
Sbjct: 179  VIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGL 238

Query: 563  LGLFAEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVET 384
            LGLFAEMRH+G QPD+VT+NTLL+A  +RGL D+AEMVF+TM+E GI P+ TTYSY+VET
Sbjct: 239  LGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVET 298

Query: 383  FAKLGQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPN 204
            F KLG+L +VA LL EME+ G+LPD S+YNVL++          A++V +QMQAAGC PN
Sbjct: 299  FGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPN 358

Query: 203  AATYSILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFN 24
            A+TYSILL LYG++G+Y+DVRELFL+MK  +  PDA+TYNILI+VFGEGGYFKEVVTLF+
Sbjct: 359  ASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFH 418

Query: 23   DMVEENV 3
            D+V+EN+
Sbjct: 419  DLVDENI 425



 Score =  135 bits (340), Expect = 2e-29
 Identities = 90/347 (25%), Positives = 161/347 (46%)
 Frame = -1

Query: 1043 YSYDVETLINKLSSLPPRGSIARCLESFRNRLSLSDFAVVFKEFARRGDWQRSLRLFKYM 864
            YSY VET   KL  L     + + +ES      +S + V+ +  A+ G  + ++ +FK M
Sbjct: 292  YSYIVETF-GKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 863  QRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGF 684
            Q    C PN   ++IL+ + G+    +   E+F +M        A +Y  +I  +G  G+
Sbjct: 351  QAAG-CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGY 409

Query: 683  HERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHN 504
             +  + L  ++  E I P+  TY  ++ AC +GG+  DA   LF  M   G  P    ++
Sbjct: 410  FKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF-HMNGKGIVPSSKAYS 468

Query: 503  TLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKLGQLGRVAELLGEMEAS 324
             L+ A G   L D+A + F TM E G      TY+ L+ TFA+ G       +L  M   
Sbjct: 469  GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 323  GHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATYSILLKLYGRNGQYEDV 144
            G   +A +++ +++          A+    +M+   C  +  T   +L +Y   G  ++ 
Sbjct: 529  GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 143  RELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDMVEENV 3
            +E F+E+K     P    Y +++ V+ + G + +   L ++M++  V
Sbjct: 589  KEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRV 635



 Score =  103 bits (257), Expect = 8e-20
 Identities = 70/298 (23%), Positives = 134/298 (44%)
 Frame = -1

Query: 911  ARRGDWQRSLRLFKYMQRQSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRS 732
            A RG    +  +FK M  +    P    ++ ++   G+   LEK   +  EM +      
Sbjct: 265  AARGLGDEAEMVFKTMI-EGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323

Query: 731  ALSYTAIINAYGRNGFHERALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLF 552
              SY  +I A+ + G  + A+++   M+A    P+  TY+ ++N   + G  +D +  LF
Sbjct: 324  ISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHG-RYDDVRELF 382

Query: 551  AEMRHDGAQPDIVTHNTLLAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLVETFAKL 372
             +M+   A+PD  T+N L+   G  G   +   +F  +++  I P+  TY  LV    K 
Sbjct: 383  LQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKG 442

Query: 371  GQLGRVAELLGEMEASGHLPDASAYNVLMDXXXXXXXXXXAVNVLRQMQAAGCTPNAATY 192
            G      ++L  M   G +P + AY+ L++          A+     M   G      TY
Sbjct: 443  GLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTY 502

Query: 191  SILLKLYGRNGQYEDVRELFLEMKVGNTAPDASTYNILIQVFGEGGYFKEVVTLFNDM 18
            + L+  + R G Y++   +   M+    + +A +++ +I+ + + G ++E +  F +M
Sbjct: 503  NSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEM 560



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 7/216 (3%)
 Frame = -1

Query: 1016 NKLSSLPPRGSIARCLESFRNRL-------SLSDFAVVFKEFARRGDWQRSLRLFKYMQR 858
            N L     RG + +  E+  +R+       +   F+ + + + + G ++ +++ F  M++
Sbjct: 503  NSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEK 562

Query: 857  QSWCRPNEHIHAILIGVLGRESLLEKANEVFDEMPAHCVPRSALSYTAIINAYGRNGFHE 678
               C  +E     ++GV     L++++ E F E+ A  +  S L Y  ++  Y +NG  +
Sbjct: 563  MR-CELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWD 621

Query: 677  RALELLSNMKAERIPPSTLTYNTVINACARGGVPWDALLGLFAEMRHDGAQPDIVTHNTL 498
             A ELL  M   R+         +I         W  +  +F ++  +G    +  +NTL
Sbjct: 622  DASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTL 681

Query: 497  LAAAGSRGLADQAEMVFRTMLEAGIFPDYTTYSYLV 390
            L A    G   +A  V     + G+FP+    S LV
Sbjct: 682  LEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLV 717