BLASTX nr result

ID: Dioscorea21_contig00025148 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025148
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540911.1| PREDICTED: uncharacterized protein LOC100813...    61   8e-08
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    60   1e-07
ref|XP_003541064.1| PREDICTED: uncharacterized protein LOC100796...    59   3e-07
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    59   5e-07
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    57   1e-06

>ref|XP_003540911.1| PREDICTED: uncharacterized protein LOC100813631 [Glycine max]
          Length = 1227

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
 Frame = -1

Query: 368  GDQWDTSNFNFLFGDNLDCSVSVLPTIDH-----SSDPFWVWNPRPCSIKISSAVYHHLN 204
            G +W+ S    LF   +  S + L TI       +    W+W   P  I  + + Y+ + 
Sbjct: 988  GWEWNFSWRRNLFDSEMGVSSTFLETIAAIRICGTLKDTWLWGAEPNGIFSTKSAYNLIK 1047

Query: 203  NLNSFSDQWSGWQLLWHIPVAPKVKHFIWKCLHGRLSTSSFLHYINLGPDNP-CVLCGLC 27
                  DQ+SG+  LW + V PKV  F W+ L  RL T   L    +  DN  C LC   
Sbjct: 1048 AEQLLEDQYSGFHQLWDLKVPPKVLSFAWRLLWDRLPTKDNLSRRQIQLDNDLCPLCQTQ 1107

Query: 26   RETIDHLF 3
             ET  HLF
Sbjct: 1108 PETASHLF 1115


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
 Frame = -1

Query: 380  DFISGDQWDTSNFNFLFGDNLDCSVSVLPTIDHSSDPFWVWN-PRPCSIKISSAVYHHLN 204
            + IS D+W+    N LF      ++  +P         W+W   +     + SA YH L 
Sbjct: 974  ELISNDRWNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELL 1033

Query: 203  NLNSFSDQWSG------WQLLWHIPVAPKVKHFIWKCLHGRLSTSSFLHYINLGPDNPCV 42
                     S       WQ +W   + PKVK F WK +H  L+  + +    +  D  C 
Sbjct: 1034 EDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACP 1093

Query: 41   LCGLCRETIDHL 6
             CG   ET +HL
Sbjct: 1094 RCGEKEETTEHL 1105


>ref|XP_003541064.1| PREDICTED: uncharacterized protein LOC100796216 [Glycine max]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = -1

Query: 368 GDQWDTSNFNFLFGDNLDCSVSVLPTIDH-----SSDPFWVWNPRPCSIKISSAVYHHLN 204
           G QW+ S    LF   +  + + L TI       +    W+W   P  I  + + Y+ + 
Sbjct: 407 GWQWNFSWRRNLFDSKMGVASTFLETIAAIRICGTLKDTWLWGAEPNGILSTKSAYNLIK 466

Query: 203 NLNSFSDQWSGWQLLWHIPVAPKVKHFIWKCLHGRLSTSSFLHYINLGPDNP-CVLCGLC 27
                 DQ SG+  LW + V PKV  F W+ L  RL T   L    +  DN  C LC   
Sbjct: 467 AEQLLEDQDSGFHQLWDLKVPPKVLSFAWRLLWDRLPTKDNLSRRQIQLDNDLCPLCQTQ 526

Query: 26  RETIDHLF 3
            ET  HLF
Sbjct: 527 PETTSHLF 534


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = -1

Query: 170 WQLLWHIPVAPKVKHFIWKCLHGRLSTSSFLHYINLGPDNPCVLCGLCRETIDHL 6
           +Q +W    +PK++HF+WKCL   L  +  L Y +L  ++ C+ C  C+ET++HL
Sbjct: 254 YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHL 308


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
 Frame = -1

Query: 359  WDTSNFNFLFGDNLDCSVSVLPTIDHSSDPF-WVWNPRPC-SIKISSAVYHHL------N 204
            WD    +  F +    ++  +P      D   W ++ R C ++K +  V   +      N
Sbjct: 1227 WDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRN 1286

Query: 203  NLNSFSDQWSG----WQLLWHIPVAPKVKHFIWKCLHGRLSTSSFLHYINLGPDNPCVLC 36
                 S+  SG    W+ LW + V  K+KHF+W+  H  L+  + LH+  +  D  CV+C
Sbjct: 1287 GCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMC 1346

Query: 35   GLCRETIDHLF 3
            G   E   HLF
Sbjct: 1347 GRYNEDAGHLF 1357


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