BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025038
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510888.1| pentatricopeptide repeat-containing protein,...   120   1e-25
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t...   119   3e-25
ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|2...   112   3e-23
ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23

>ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550003|gb|EEF51490.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  120 bits (301), Expect = 1e-25
 Identities = 50/106 (47%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRV 136
           P+ LTFPFL K C+  +    G+ +H H  KLG + D+F+QN+++ FY+ C  + ++R++
Sbjct: 106 PDCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKL 165

Query: 135 FDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRMG-DRNVISWNS 1
           FDEM  +D+VSWNS++IGYLR G+ D+++++FR+M  +RNVI+WNS
Sbjct: 166 FDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNS 211



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRV 136
           P+ +T   +   C+       G+ +HS++ + G   D+ I  A+V  Y  CG ++ A  V
Sbjct: 247 PDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAYEV 306

Query: 135 FDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRM 31
           F EM +KD ++W +++  +   G   EA D+F  M
Sbjct: 307 FREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEM 341


>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 541

 Score =  119 bits (298), Expect = 3e-25
 Identities = 54/106 (50%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCS-LRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARR 139
           PN+LTFPFL K CS L+   T G+ +H+HV K GF  DVF+ N+++  +   G+ ++AR+
Sbjct: 126 PNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARK 185

Query: 138 VFDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRMGDRNVISWNS 1
           VFDEM  +D+VSWNS+++GYLR GE + A+++FR+M  RN+I+WNS
Sbjct: 186 VFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNS 231



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/95 (28%), Positives = 49/95 (51%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRV 136
           P+ +T   +   C+L      G+ +H+++ K     DV I  A+V  Y  CG ++ A  +
Sbjct: 263 PDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEI 322

Query: 135 FDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRM 31
           F++MP+KD  +W +++  +   G   +A D F  M
Sbjct: 323 FNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEM 357


>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  115 bits (287), Expect = 5e-24
 Identities = 53/105 (50%), Positives = 74/105 (70%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRV 136
           PN LTFPFL K C+  L   +GQ +H+ V K GF  DV++ N+++  Y   G++ +AR+V
Sbjct: 124 PNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKV 183

Query: 135 FDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRMGDRNVISWNS 1
           FDEM   D+V+WNS++IG LR G  D AMD+FR+M  RN+I+WNS
Sbjct: 184 FDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNS 228


>ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|222871498|gb|EEF08629.1|
           predicted protein [Populus trichocarpa]
          Length = 793

 Score =  112 bits (280), Expect = 3e-23
 Identities = 51/104 (49%), Positives = 71/104 (68%)
 Frame = -2

Query: 312 NHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRVF 133
           ++ T+P LF+ CS+RL    G+C+  HV K+GF  DV+IQN ++  YA CG +  AR+VF
Sbjct: 125 DNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVF 184

Query: 132 DEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRMGDRNVISWNS 1
           D     D+VSWNS+L GY+  G  +EA DV+ RM +RNVI+ NS
Sbjct: 185 DGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNS 228



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 33/93 (35%), Positives = 60/93 (64%)
 Frame = -2

Query: 279 CSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRVFDEMPQKDLVSW 100
           CS  L+  +G+ +H  V K+G    V +QNA++  Y++C  +  A+++F E    D +SW
Sbjct: 299 CSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISW 358

Query: 99  NSLLIGYLRCGEADEAMDVFRRMGDRNVISWNS 1
           NS++ GY++CGE ++A  +F  M D++ +SW++
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMPDKDNVSWSA 391


>ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 442

 Score =  110 bits (276), Expect = 9e-23
 Identities = 49/105 (46%), Positives = 74/105 (70%)
 Frame = -2

Query: 315 PNHLTFPFLFKHCSLRLLATSGQCLHSHVFKLGFHLDVFIQNAMVFFYATCGVIRHARRV 136
           P++LT+PFL K  S  L    G  +H H+ K G  +D FIQN+++  YA+C  I  AR+V
Sbjct: 111 PDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKV 170

Query: 135 FDEMPQKDLVSWNSLLIGYLRCGEADEAMDVFRRMGDRNVISWNS 1
           FDEMP+K+LV+WN++L GY +CG+ + A +VF  M +++V+SW+S
Sbjct: 171 FDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSS 215