BLASTX nr result

ID: Dioscorea21_contig00024352 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024352
         (633 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003564022.1| PREDICTED: U-box domain-containing protein 3...    74   3e-11
dbj|BAJ95293.1| predicted protein [Hordeum vulgare subsp. vulgare]     72   8e-11
gb|AFW85194.1| putative ARM repeat-containing protein containing...    67   4e-09
gb|AFW85193.1| putative ARM repeat-containing protein containing...    67   4e-09
ref|NP_001057254.1| Os06g0238000 [Oryza sativa Japonica Group] g...    64   2e-08

>ref|XP_003564022.1| PREDICTED: U-box domain-containing protein 38-like [Brachypodium
           distachyon]
          Length = 535

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 62/169 (36%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
 Frame = -2

Query: 494 LMADPVVVPSGHTFERTVIQACNDLHF----VXXXXXXXXXXXXXXPNSALASAISRWCE 327
           LMADPV+VP G TFER  IQAC  L F    V              PN AL SAI  WC+
Sbjct: 47  LMADPVIVPPGQTFERACIQACAALAFYPPVVAAEVLPSSPPLVLIPNVALRSAILNWCD 106

Query: 326 LSGHPHPVPLPLDSALALVRRLMAVDDGGPKLCXXXXXXXXXXXXXXXXXXXXXXXXXXX 147
               PHP PLPLD+A  +VRRLM      P                              
Sbjct: 107 RLMLPHPSPLPLDTAGHIVRRLMP-----PPPPRQEQRPPPPANSVRTRNRYSYGGDEFL 161

Query: 146 SEIVDETLDDPLEIEILNKI--KDPRVSEQESGLISLRRATREGQERRI 6
            E    T    LE EI+  +  +    SE ++ + SLR+ATRE +E RI
Sbjct: 162 QEPNQTTGRGSLEEEIMAVLAAEGASPSELKAAMASLRQATRENREMRI 210


>dbj|BAJ95293.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 42/81 (51%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = -2

Query: 497 TLMADPVVVPSGHTFERTVIQACNDLHFVXXXXXXXXXXXXXXP-NSALASAISRWCELS 321
           TLMADPV+VP G T ER  IQAC  L F                 N AL SAI  WCE  
Sbjct: 47  TLMADPVIVPPGQTIERACIQACAALAFYPPAVAGLPSSPLVLIPNVALRSAILNWCERL 106

Query: 320 GHPHPVPLPLDSALALVRRLM 258
           G PHP PL LD+A  +VRRLM
Sbjct: 107 GLPHPSPLSLDTAGDIVRRLM 127


>gb|AFW85194.1| putative ARM repeat-containing protein containing family protein
           [Zea mays]
          Length = 261

 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 57/173 (32%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
 Frame = -2

Query: 497 TLMADPVVVPSGHTFERTVIQACNDLHF--------VXXXXXXXXXXXXXXPNSALASAI 342
           TLMADPVV P G TFER  IQAC  L F        +              PN AL +AI
Sbjct: 46  TLMADPVVAPPGQTFERACIQACAALAFSPPTVAVDLSESHSCSSAPLVLIPNVALRNAI 105

Query: 341 SRWCELSGHPHPVPLPLDSALALVRRLMAVDDGGPKLCXXXXXXXXXXXXXXXXXXXXXX 162
             WC+    PHP P+  D+A  +VRRLM  D     L                       
Sbjct: 106 LNWCDRLALPHPSPMSPDTAHDIVRRLMPQDRQRSSLA-------------------QRP 146

Query: 161 XXXXXSEIVDETLDDPLEIEILNKI--KDPRVSEQESGLISLRRATREGQERR 9
                 +       D LE EI+  +  +    +EQ S +  LR+ATRE +E R
Sbjct: 147 QPQVQQQPSSRQRGDALEEEIMAALGTEGATPAEQASAMALLRQATRENREVR 199


>gb|AFW85193.1| putative ARM repeat-containing protein containing family protein
           [Zea mays]
          Length = 508

 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 57/173 (32%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
 Frame = -2

Query: 497 TLMADPVVVPSGHTFERTVIQACNDLHF--------VXXXXXXXXXXXXXXPNSALASAI 342
           TLMADPVV P G TFER  IQAC  L F        +              PN AL +AI
Sbjct: 46  TLMADPVVAPPGQTFERACIQACAALAFSPPTVAVDLSESHSCSSAPLVLIPNVALRNAI 105

Query: 341 SRWCELSGHPHPVPLPLDSALALVRRLMAVDDGGPKLCXXXXXXXXXXXXXXXXXXXXXX 162
             WC+    PHP P+  D+A  +VRRLM  D     L                       
Sbjct: 106 LNWCDRLALPHPSPMSPDTAHDIVRRLMPQDRQRSSLA-------------------QRP 146

Query: 161 XXXXXSEIVDETLDDPLEIEILNKI--KDPRVSEQESGLISLRRATREGQERR 9
                 +       D LE EI+  +  +    +EQ S +  LR+ATRE +E R
Sbjct: 147 QPQVQQQPSSRQRGDALEEEIMAALGTEGATPAEQASAMALLRQATRENREVR 199


>ref|NP_001057254.1| Os06g0238000 [Oryza sativa Japonica Group]
           gi|51535149|dbj|BAD37861.1| arm repeat-containing
           protein-like [Oryza sativa Japonica Group]
           gi|51535813|dbj|BAD37898.1| arm repeat-containing
           protein-like [Oryza sativa Japonica Group]
           gi|113595294|dbj|BAF19168.1| Os06g0238000 [Oryza sativa
           Japonica Group]
          Length = 518

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 40/88 (45%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
 Frame = -2

Query: 497 TLMADPVVVPSGHTFERTVIQACNDLHF--------VXXXXXXXXXXXXXXPNSALASAI 342
           TLMADPVVVP G TFER  IQAC  L F        +              PN AL +AI
Sbjct: 42  TLMADPVVVPPGQTFERACIQACAALAFSPPAVAADLSSLPPSASSPLVLVPNVALRTAI 101

Query: 341 SRWCELSGHPHPVPLPLDSALALVRRLM 258
             WC+    P+P PL  D+A  +VRRLM
Sbjct: 102 LNWCDRLSLPYPAPLSPDTARDVVRRLM 129


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