BLASTX nr result

ID: Dioscorea21_contig00024345 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024345
         (1109 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002464795.1| hypothetical protein SORBIDRAFT_01g026845 [S...    64   7e-08
ref|XP_003571395.1| PREDICTED: uncharacterized protein LOC100824...    62   3e-07
gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               60   1e-06
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    59   2e-06
emb|CAN83313.1| hypothetical protein VITISV_001463 [Vitis vinifera]    59   2e-06

>ref|XP_002464795.1| hypothetical protein SORBIDRAFT_01g026845 [Sorghum bicolor]
           gi|241918649|gb|EER91793.1| hypothetical protein
           SORBIDRAFT_01g026845 [Sorghum bicolor]
          Length = 295

 Score = 63.9 bits (154), Expect = 7e-08
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
 Frame = +2

Query: 650 LKIISWNCRGLSNPRTVDRILDILKNKSPDFLCLVETKTSIPRLQRFCLMIKHSWEWAAI 829
           +KI++WNCRGL++ R V  +L++ + ++PD L L ET  S  +++   L  K   E  AI
Sbjct: 1   MKILAWNCRGLASHRAVRALLEVQRRENPDVLFLSETHLSKAKVEN--LKRKVGCEKFAI 58

Query: 830 -PSNGFSGGILVLWKRSFGNVTPVATSRWVLHLVITSNGITWVLSTVYNSQVEK 988
             S+G SGG+L+LWK+    V PV  S++ + +V+      W L+ +Y     K
Sbjct: 59  HESDGRSGGLLMLWKKEV-VVRPVNISQYYIDVVMEEEE-EWRLTGIYGDPYHK 110


>ref|XP_003571395.1| PREDICTED: uncharacterized protein LOC100824808 [Brachypodium
           distachyon]
          Length = 975

 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
 Frame = +2

Query: 635 MLFMNLKIISWNCRGLSNPRTVDRILDILKNKSPDFLCLVETKTSI--PRLQRFCLMIKH 808
           ML  N+ ++ WN RGL+NP     + D++++     +C+ ETK  +   RL R  L    
Sbjct: 1   MLQHNVNLVCWNVRGLNNPSRQAAVRDLIRDTHATIICIQETKLQVVDDRLIRDLLGHCF 60

Query: 809 SWEWAAIPSNGFSGGILVLWKRSFGNVTPVATSRWVLHLVIT--SNGITWVLSTVYNSQ 979
           S  +A +P+ G  GG+L+     F  ++ V  S   + + +T  S G  W L++VY  Q
Sbjct: 61  SANFAVLPAAGTRGGMLLAASEDFFTISNVHLSAHSITVTVTMRSKGAMWSLTSVYGPQ 119


>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 36/104 (34%), Positives = 57/104 (54%)
 Frame = +2

Query: 659 ISWNCRGLSNPRTVDRILDILKNKSPDFLCLVETKTSIPRLQRFCLMIKHSWEWAAIPSN 838
           + WNC+GL    TV R+ +I +   PD +CL ETK     ++  C  +  S  +  +PS 
Sbjct: 57  LCWNCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFS-NFVMVPSM 115

Query: 839 GFSGGILVLWKRSFGNVTPVATSRWVLHLVITSNGITWVLSTVY 970
           G SGG++VLWK S  +++    S  ++   + SN + + LS VY
Sbjct: 116 GLSGGLVVLWKPSV-HISVSFNSPNLVDCYVQSNEVGFNLSFVY 158


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
 Frame = +2

Query: 656 IISWNCRGLSNPRTVDRILDILKNKSPDFLCLVETKTSIPRLQRFCLMIKHSWEWAAIPS 835
           +ISWNC+GL NP T+  + ++ K+  PD L L+ETK S   + +    + + +     P 
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEP- 60

Query: 836 NGFSGGILVLWKRSFGNVTPVATSRWVLHLVITSNGITWVLSTVYNSQV----EKVW 994
            G SGG+ + WK S   +  +   + ++ L ++S    W +S VY   V     K+W
Sbjct: 61  EGRSGGLAIFWK-SHLEIEFLYADKNLMDLQVSSRNKVWFISCVYGLPVTHMRPKLW 116


>emb|CAN83313.1| hypothetical protein VITISV_001463 [Vitis vinifera]
          Length = 1780

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +2

Query: 647 NLKIISWNCRGLSNPRTVDRILDILKNKSPDFLCLVETKTSIPRLQRFCLMIKHSWEWAA 826
           ++KIISWN RGL + +    +   L+++ PD + + ETK    R     +    + +WAA
Sbjct: 753 HMKIISWNTRGLGSKKKRRVVKXFLRSEKPDVVMIQETKKECDRRFVGSVWTARNKDWAA 812

Query: 827 IPSNGFSGGILVLWK 871
           +P++G SGGIL++W+
Sbjct: 813 LPASGASGGILIIWE 827


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