BLASTX nr result

ID: Dioscorea21_contig00024212 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024212
         (741 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270283.1| PREDICTED: chromatin structure-remodeling co...   333   2e-89
ref|XP_004147636.1| PREDICTED: chromatin structure-remodeling co...   318   7e-85
ref|XP_002440558.1| hypothetical protein SORBIDRAFT_09g003070 [S...   315   6e-84
gb|ACG31817.1| SWI/SNF-related, matrix-associated, actin-depende...   315   6e-84
ref|NP_001130832.1| uncharacterized protein LOC100191936 [Zea ma...   315   6e-84

>ref|XP_002270283.1| PREDICTED: chromatin structure-remodeling complex protein BSH
           [Vitis vinifera] gi|297736833|emb|CBI26034.3| unnamed
           protein product [Vitis vinifera]
          Length = 243

 Score =  333 bits (855), Expect = 2e-89
 Identities = 161/217 (74%), Positives = 192/217 (88%)
 Frame = -3

Query: 652 MKSLPPSASKGPVKFRMPTAENLVPIRLDIEIDGQRFRDAFTWNLDDPDSEIANFARRTV 473
           MK LP ++SK PVKFRMPTA+NLVPIRLDIEIDG RF+DAFTWN  DPDSE+  FA+RTV
Sbjct: 1   MKPLPSTSSKNPVKFRMPTADNLVPIRLDIEIDGHRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 472 KDLKLSPSFMTQIAQSLQTQLAEFRSLEGQEMQTKEKIVPLKLDLRVNNTVIRDQFLWDV 293
           KDLKL P+F+TQIAQS+Q+QLAEFRS EGQ+MQT EKIVP+KLDLRVN+T+I+DQFLWD+
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLIKDQFLWDL 120

Query: 292 SNFESDPEEFARTLCADLDIIDPEVGPAIAVAIREQLYEIATQSVSSARESRLAKKGRRG 113
           +NFESDPEEFART C DL + DPEVGPAIAVAIREQLYEIA QSV+SARE+R++KKGRRG
Sbjct: 121 NNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETRISKKGRRG 180

Query: 112 VESISNNKVANGALDLMKVFGSKGTVLRKRKEWYLYE 2
            E I  +K +  ALDLMK+FG+K +++RKR+EW +YE
Sbjct: 181 AEHIPASKASGTALDLMKLFGNKSSIIRKRREWDVYE 217


>ref|XP_004147636.1| PREDICTED: chromatin structure-remodeling complex protein BSH-like
           [Cucumis sativus] gi|449498785|ref|XP_004160633.1|
           PREDICTED: chromatin structure-remodeling complex
           protein BSH-like [Cucumis sativus]
          Length = 240

 Score =  318 bits (815), Expect = 7e-85
 Identities = 153/217 (70%), Positives = 186/217 (85%)
 Frame = -3

Query: 652 MKSLPPSASKGPVKFRMPTAENLVPIRLDIEIDGQRFRDAFTWNLDDPDSEIANFARRTV 473
           MK+     SK P KFR+PTAENLVPIRLDIEIDGQRF+DAFTWN  DPDSE+  FA+RTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 472 KDLKLSPSFMTQIAQSLQTQLAEFRSLEGQEMQTKEKIVPLKLDLRVNNTVIRDQFLWDV 293
           KDLKL P+F+TQIAQS+Q+QL EFRS EGQ+M T EKI+P+KLDLRVNNT+I+DQFLWD+
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 292 SNFESDPEEFARTLCADLDIIDPEVGPAIAVAIREQLYEIATQSVSSARESRLAKKGRRG 113
           +N+ESDPEEF+RTLC DL I DPEVGPAIAVAIREQLYEIA Q+V+SARESR++KKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 112 VESISNNKVANGALDLMKVFGSKGTVLRKRKEWYLYE 2
            E +  +K    ++DL+K+FG + +V+RKRK+W +YE
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYE 217


>ref|XP_002440558.1| hypothetical protein SORBIDRAFT_09g003070 [Sorghum bicolor]
           gi|241945843|gb|EES18988.1| hypothetical protein
           SORBIDRAFT_09g003070 [Sorghum bicolor]
          Length = 255

 Score =  315 bits (807), Expect = 6e-84
 Identities = 156/218 (71%), Positives = 183/218 (83%), Gaps = 1/218 (0%)
 Frame = -3

Query: 652 MKSLPPSASK-GPVKFRMPTAENLVPIRLDIEIDGQRFRDAFTWNLDDPDSEIANFARRT 476
           MK++   AS+   V FRMPT +NLVPIR+D+E+DGQR+RDAFTWN  DPDSEI +FA+RT
Sbjct: 1   MKTVSLGASRPSTVNFRMPTRDNLVPIRVDVEVDGQRYRDAFTWNPRDPDSEIISFAKRT 60

Query: 475 VKDLKLSPSFMTQIAQSLQTQLAEFRSLEGQEMQTKEKIVPLKLDLRVNNTVIRDQFLWD 296
            KDLKL  +F+ Q+ QS+Q QLAEFRS EGQEMQ KEKIVPLK+DLRVNNTVIRDQFLWD
Sbjct: 61  AKDLKLPANFVPQMLQSIQGQLAEFRSYEGQEMQIKEKIVPLKIDLRVNNTVIRDQFLWD 120

Query: 295 VSNFESDPEEFARTLCADLDIIDPEVGPAIAVAIREQLYEIATQSVSSARESRLAKKGRR 116
           + N +SDPEEFARTLC DL+I DPEVGPAIAV+IREQLYEIA+QSVS  RE +++KKGRR
Sbjct: 121 IGNLDSDPEEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSVMREKQMSKKGRR 180

Query: 115 GVESISNNKVANGALDLMKVFGSKGTVLRKRKEWYLYE 2
             E  SN+K  N A+DL K FGSKG+V+RKRKEWYLYE
Sbjct: 181 APEFSSNSKAVNNAVDLFKYFGSKGSVIRKRKEWYLYE 218


>gb|ACG31817.1| SWI/SNF-related, matrix-associated, actin-dependent regulator of
           chromatin subfamily B member 1 [Zea mays]
          Length = 255

 Score =  315 bits (807), Expect = 6e-84
 Identities = 156/218 (71%), Positives = 183/218 (83%), Gaps = 1/218 (0%)
 Frame = -3

Query: 652 MKSLPPSASK-GPVKFRMPTAENLVPIRLDIEIDGQRFRDAFTWNLDDPDSEIANFARRT 476
           MK++   AS+   V FRMPT +NLVPIR+D+E+DGQR+RDAFTWN  DPDSEI +FA+RT
Sbjct: 1   MKTVSLGASRPSTVNFRMPTRDNLVPIRVDVEVDGQRYRDAFTWNPRDPDSEIISFAKRT 60

Query: 475 VKDLKLSPSFMTQIAQSLQTQLAEFRSLEGQEMQTKEKIVPLKLDLRVNNTVIRDQFLWD 296
            KDLKL  +F+ Q+ QS+Q QLAEFRS EGQEMQ KEKIVPLK+DLRVNNTVIRDQFLWD
Sbjct: 61  AKDLKLPANFVPQMLQSIQGQLAEFRSYEGQEMQIKEKIVPLKIDLRVNNTVIRDQFLWD 120

Query: 295 VSNFESDPEEFARTLCADLDIIDPEVGPAIAVAIREQLYEIATQSVSSARESRLAKKGRR 116
           + N +SDPEEFARTLC DL+I DPEVGPAIAV+IREQLYEIA+QSVS  RE +++KKGRR
Sbjct: 121 IGNLDSDPEEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSVMREKQMSKKGRR 180

Query: 115 GVESISNNKVANGALDLMKVFGSKGTVLRKRKEWYLYE 2
             E  SN+K  N A+DL K FGSKG+V+RKRKEWYLYE
Sbjct: 181 APEFSSNSKAVNNAVDLFKYFGSKGSVIRKRKEWYLYE 218


>ref|NP_001130832.1| uncharacterized protein LOC100191936 [Zea mays]
           gi|194690230|gb|ACF79199.1| unknown [Zea mays]
           gi|224030063|gb|ACN34107.1| unknown [Zea mays]
           gi|413950030|gb|AFW82679.1| SWI/SNF, matrix-associated,
           actin-dependent regulator of chromatin subfamily B
           member 1 [Zea mays]
          Length = 255

 Score =  315 bits (807), Expect = 6e-84
 Identities = 156/218 (71%), Positives = 183/218 (83%), Gaps = 1/218 (0%)
 Frame = -3

Query: 652 MKSLPPSASK-GPVKFRMPTAENLVPIRLDIEIDGQRFRDAFTWNLDDPDSEIANFARRT 476
           MK++   AS+   V FRMPT +NLVPIR+D+E+DGQR+RDAFTWN  DPDSEI +FA+RT
Sbjct: 1   MKTVSLGASRPSTVNFRMPTRDNLVPIRVDVEVDGQRYRDAFTWNPRDPDSEIISFAKRT 60

Query: 475 VKDLKLSPSFMTQIAQSLQTQLAEFRSLEGQEMQTKEKIVPLKLDLRVNNTVIRDQFLWD 296
            KDLKL  +F+ Q+ QS+Q QLAEFRS EGQEMQ KEKIVPLK+DLRVNNTVIRDQFLWD
Sbjct: 61  AKDLKLPANFVPQMLQSIQGQLAEFRSYEGQEMQIKEKIVPLKIDLRVNNTVIRDQFLWD 120

Query: 295 VSNFESDPEEFARTLCADLDIIDPEVGPAIAVAIREQLYEIATQSVSSARESRLAKKGRR 116
           + N +SDPEEFARTLC DL+I DPEVGPAIAV+IREQLYEIA+QSVS  RE +++KKGRR
Sbjct: 121 IGNLDSDPEEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSVMREKQMSKKGRR 180

Query: 115 GVESISNNKVANGALDLMKVFGSKGTVLRKRKEWYLYE 2
             E  SN+K  N A+DL K FGSKG+V+RKRKEWYLYE
Sbjct: 181 APEFSSNSKAVNNAVDLFKYFGSKGSVIRKRKEWYLYE 218


Top