BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00023960
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001189538.1| splicing factor, CC1-like protein [Arabidops...    59   3e-07
ref|NP_001189537.1| splicing factor, CC1-like protein [Arabidops...    59   3e-07
ref|XP_002886087.1| hypothetical protein ARALYDRAFT_480573 [Arab...    59   3e-07
gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana]         59   3e-07
ref|NP_565399.1| splicing factor, CC1-like protein [Arabidopsis ...    59   3e-07

>ref|NP_001189538.1| splicing factor, CC1-like protein [Arabidopsis thaliana]
           gi|330251466|gb|AEC06560.1| splicing factor, CC1-like
           protein [Arabidopsis thaliana]
          Length = 610

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/83 (45%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  MDFDEYEYLEKAVENPDAAKE-GVGANGNGVRAXXXXXXXXXXXXXXXXAER-ESERGLK 184
           MDFDEYEYLEK VENP    E G G     V++                 ER E E G +
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR 60

Query: 185 RSRSENHRDQRSRDGERERDRHR 253
             RS +H   RSRD  RERDRHR
Sbjct: 61  SKRSRSHHRSRSRD--RERDRHR 81


>ref|NP_001189537.1| splicing factor, CC1-like protein [Arabidopsis thaliana]
           gi|330251465|gb|AEC06559.1| splicing factor, CC1-like
           protein [Arabidopsis thaliana]
          Length = 599

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/83 (45%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  MDFDEYEYLEKAVENPDAAKE-GVGANGNGVRAXXXXXXXXXXXXXXXXAER-ESERGLK 184
           MDFDEYEYLEK VENP    E G G     V++                 ER E E G +
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR 60

Query: 185 RSRSENHRDQRSRDGERERDRHR 253
             RS +H   RSRD  RERDRHR
Sbjct: 61  SKRSRSHHRSRSRD--RERDRHR 81


>ref|XP_002886087.1| hypothetical protein ARALYDRAFT_480573 [Arabidopsis lyrata subsp.
           lyrata] gi|297331927|gb|EFH62346.1| hypothetical protein
           ARALYDRAFT_480573 [Arabidopsis lyrata subsp. lyrata]
          Length = 557

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/83 (45%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  MDFDEYEYLEKAVENPDAAKE-GVGANGNGVRAXXXXXXXXXXXXXXXXAER-ESERGLK 184
           MDFDEYEYLEK VENP    E G G     V++                 ER E E G +
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGRERSRSSRHRGDEKKERDEDEDGRR 60

Query: 185 RSRSENHRDQRSRDGERERDRHR 253
             RS +H   RSRD  RERDRHR
Sbjct: 61  SKRSRSHHRSRSRD--RERDRHR 81


>gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana]
          Length = 560

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/83 (45%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  MDFDEYEYLEKAVENPDAAKE-GVGANGNGVRAXXXXXXXXXXXXXXXXAER-ESERGLK 184
           MDFDEYEYLEK VENP    E G G     V++                 ER E E G +
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR 60

Query: 185 RSRSENHRDQRSRDGERERDRHR 253
             RS +H   RSRD  RERDRHR
Sbjct: 61  SKRSRSHHRSRSRD--RERDRHR 81


>ref|NP_565399.1| splicing factor, CC1-like protein [Arabidopsis thaliana]
           gi|20197280|gb|AAC64224.2| putative splicing factor
           [Arabidopsis thaliana] gi|133778824|gb|ABO38752.1|
           At2g16940 [Arabidopsis thaliana]
           gi|330251464|gb|AEC06558.1| splicing factor, CC1-like
           protein [Arabidopsis thaliana]
          Length = 561

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/83 (45%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  MDFDEYEYLEKAVENPDAAKE-GVGANGNGVRAXXXXXXXXXXXXXXXXAER-ESERGLK 184
           MDFDEYEYLEK VENP    E G G     V++                 ER E E G +
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR 60

Query: 185 RSRSENHRDQRSRDGERERDRHR 253
             RS +H   RSRD  RERDRHR
Sbjct: 61  SKRSRSHHRSRSRD--RERDRHR 81