BLASTX nr result

ID: Dioscorea21_contig00023916 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00023916
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001241603.1| uncharacterized protein LOC100812537 [Glycin...    39   6e-06
ref|XP_002302243.1| predicted protein [Populus trichocarpa] gi|2...    42   6e-06

>ref|NP_001241603.1| uncharacterized protein LOC100812537 [Glycine max]
           gi|255644789|gb|ACU22896.1| unknown [Glycine max]
          Length = 363

 Score = 38.9 bits (89), Expect(2) = 6e-06
 Identities = 17/35 (48%), Positives = 28/35 (80%)
 Frame = +3

Query: 3   SIAKVVGTILSVSGAMVMTLCKGPKIWMLCTREGT 107
           S+AKV+GT+++ SGA++MTL KGP+I +  + + T
Sbjct: 140 SLAKVIGTLVTFSGALLMTLYKGPQIKLFFSPDTT 174



 Score = 35.8 bits (81), Expect(2) = 6e-06
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
 Frame = +1

Query: 139 LKGSIFLLVACICW-------SFTLRSYPWKLTCSFLIC 234
           L G++FLL+ C+ W       S TL+ YP +L+ S L+C
Sbjct: 190 LSGTLFLLLGCVAWSSFFILQSITLKRYPAELSLSSLVC 228


>ref|XP_002302243.1| predicted protein [Populus trichocarpa] gi|222843969|gb|EEE81516.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 42.4 bits (98), Expect(2) = 6e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = +3

Query: 3   SIAKVVGTILSVSGAMVMTLCKGPKIWML----CTREGTLDNGTG 125
           S AKVVGT+++V+GAMVMTL KGP I  +        GT  N +G
Sbjct: 129 SAAKVVGTVITVTGAMVMTLYKGPIIDFIRSQGAAHRGTTSNASG 173



 Score = 32.3 bits (72), Expect(2) = 6e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
 Frame = +1

Query: 139 LKGSIFLLVACICW-------SFTLRSYPWKLTCSFLIC 234
           L G++ LL +C  W       SFTL+ YP +L+ + LIC
Sbjct: 178 LTGTLMLLASCCGWASFFILQSFTLKKYPAELSLTALIC 216


Top