BLASTX nr result

ID: Dioscorea21_contig00021963 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021963
         (560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97105.1| hypothetical protein LOC_Os12g18090 [Oryza sativa...    42   2e-07
gb|EEE55088.1| hypothetical protein OsJ_02830 [Oryza sativa Japo...    39   1e-06
gb|EEC71188.1| hypothetical protein OsI_03078 [Oryza sativa Indi...    39   1e-06
ref|NP_001043725.1| Os01g0650700 [Oryza sativa Japonica Group] g...    39   1e-06
dbj|BAD68801.1| unknown protein [Oryza sativa Japonica Group]          39   1e-06

>gb|ABA97105.1| hypothetical protein LOC_Os12g18090 [Oryza sativa Japonica Group]
          Length = 392

 Score = 42.0 bits (97), Expect(2) = 2e-07
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 219 KICDEILGTRSGYIKGLGYGPKPN-SSRCGHAQIINDLEEEKNMWKEKYEAEALENKNNR 395
           +IC+++LG   GYI+G G+GPKPN  +    A     +EEE    K+    +  +    +
Sbjct: 270 QICEKVLGKAYGYIRGRGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQ 329

Query: 396 AQLTKHEKML 425
            QL   +K L
Sbjct: 330 NQLESQQKQL 339



 Score = 38.1 bits (87), Expect(2) = 2e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   QGSKSFVVVRHELMKNDDETGEQHECNRVELYKSTHYKQGKGWTSLEAETNYYAMQQ 174
           +G+K FV ++HEL            C+++ LYK   Y   KGW S +A  NY  M Q
Sbjct: 209 KGTKPFVALQHEL-----------SCDQISLYKEC-YCSDKGWASRDARQNYETMLQ 253


>gb|EEE55088.1| hypothetical protein OsJ_02830 [Oryza sativa Japonica Group]
          Length = 527

 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 KICDEILGTRSGYIKGLGYGPKPN-SSRCGHAQIINDLEEE 338
           +IC+++LG   GYI+G G+GPKPN  +    A     +EEE
Sbjct: 470 QICEKVLGKAYGYIRGRGHGPKPNRRASSTSANTYQQMEEE 510



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   QGSKSFVVVRHELMKNDDETGEQHECNRVELYKSTHYKQGKGWTSLEAETNYYAMQQ 174
           +G+K FV ++HEL            C+++ LYK   Y   KGW S +A  NY  M Q
Sbjct: 409 KGTKPFVALQHEL-----------SCDQISLYKEC-YCSDKGWASRDARQNYETMLQ 453


>gb|EEC71188.1| hypothetical protein OsI_03078 [Oryza sativa Indica Group]
          Length = 314

 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 KICDEILGTRSGYIKGLGYGPKPN-SSRCGHAQIINDLEEE 338
           +IC+++LG   GYI+G G+GPKPN  +    A     +EEE
Sbjct: 257 QICEKVLGKAYGYIRGRGHGPKPNRRASSTSANTYQQMEEE 297



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   QGSKSFVVVRHELMKNDDETGEQHECNRVELYKSTHYKQGKGWTSLEAETNYYAMQQ 174
           +G+K FV ++HEL            C+++ LYK   Y   KGW S +A  NY  M Q
Sbjct: 196 KGTKPFVALQHEL-----------SCDQISLYKEC-YCSDKGWASRDARQNYETMLQ 240


>ref|NP_001043725.1| Os01g0650700 [Oryza sativa Japonica Group]
           gi|113533256|dbj|BAF05639.1| Os01g0650700, partial
           [Oryza sativa Japonica Group]
          Length = 259

 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 KICDEILGTRSGYIKGLGYGPKPN-SSRCGHAQIINDLEEE 338
           +IC+++LG   GYI+G G+GPKPN  +    A     +EEE
Sbjct: 202 QICEKVLGKAYGYIRGRGHGPKPNRRASSTSANTYQQMEEE 242



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   QGSKSFVVVRHELMKNDDETGEQHECNRVELYKSTHYKQGKGWTSLEAETNYYAMQQ 174
           +G+K FV ++HEL            C+++ LYK   Y   KGW S +A  NY  M Q
Sbjct: 141 KGTKPFVALQHEL-----------SCDQISLYKEC-YCSDKGWASRDARQNYETMLQ 185


>dbj|BAD68801.1| unknown protein [Oryza sativa Japonica Group]
          Length = 209

 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 KICDEILGTRSGYIKGLGYGPKPN-SSRCGHAQIINDLEEE 338
           +IC+++LG   GYI+G G+GPKPN  +    A     +EEE
Sbjct: 152 QICEKVLGKAYGYIRGRGHGPKPNRRASSTSANTYQQMEEE 192



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   QGSKSFVVVRHELMKNDDETGEQHECNRVELYKSTHYKQGKGWTSLEAETNYYAMQQ 174
           +G+K FV ++HEL            C+++ LYK   Y   KGW S +A  NY  M Q
Sbjct: 91  KGTKPFVALQHEL-----------SCDQISLYKEC-YCSDKGWASRDARQNYETMLQ 135


Top