BLASTX nr result

ID: Dioscorea21_contig00021940 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021940
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316052.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09
ref|XP_002512527.1| conserved hypothetical protein [Ricinus comm...    62   6e-08
ref|XP_002330029.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07
ref|NP_568489.1| uncharacterized protein [Arabidopsis thaliana] ...    59   5e-07
ref|XP_002872235.1| hypothetical protein ARALYDRAFT_489512 [Arab...    58   7e-07

>ref|XP_002316052.1| predicted protein [Populus trichocarpa] gi|222865092|gb|EEF02223.1|
           predicted protein [Populus trichocarpa]
          Length = 82

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 20/76 (26%)
 Frame = +2

Query: 140 PSYMRWPELGLDS-----LRWPEFDFSVF---------------FDDMLWTIMVVFETLT 259
           PS  RWPE G        LRWPEFDFS F                DD+LWT +   E++ 
Sbjct: 7   PSIFRWPEFGFSMPSSSILRWPEFDFSYFTTRLTLESLRWLDFAIDDVLWTFVTALESVA 66

Query: 260 LVTAVCFFYVFCGCSI 307
           L   +C+F+VFCGC++
Sbjct: 67  LTAMLCYFFVFCGCTL 82


>ref|XP_002512527.1| conserved hypothetical protein [Ricinus communis]
           gi|223548488|gb|EEF49979.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 78

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
 Frame = +2

Query: 83  AVSMFRWFEVNIFYAVRSVPSYMRWPELGLDSL---RWPEFDFSV-FFDDMLWTIMVVFE 250
           + S  RW  V+  Y      S +RWP+    S    RWPE + +    DD++W ++  FE
Sbjct: 6   STSALRWLGVDTAY------SLLRWPQFMSSSYLSPRWPELNLNFSIVDDVVWGLITAFE 59

Query: 251 TLTLVTAVCFFYVFCGCSI 307
           ++ LV+ +CFF++FCGC+I
Sbjct: 60  SVALVSMLCFFFLFCGCTI 78


>ref|XP_002330029.1| predicted protein [Populus trichocarpa] gi|222871454|gb|EEF08585.1|
           predicted protein [Populus trichocarpa]
          Length = 96

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
 Frame = +2

Query: 83  AVSMFR-WFEVNIFYAVRSV----PSYMRWPELGLDS------------LRWPEFDFSVF 211
           + S FR W  +++ Y   S+     S +RWP     +            +RWPE DFS+ 
Sbjct: 6   STSTFRQWLGLDVAYTTSSIWASSISVLRWPSQLRTTTNPSRWWAPPRMMRWPELDFSIL 65

Query: 212 FDDMLWTIMVVFETLTLVTAVCFFYVFCGCSI 307
            DD++W+++  FE++ LV+ + FF++FCGC++
Sbjct: 66  -DDVVWSLVTAFESVALVSMLAFFFLFCGCTV 96


>ref|NP_568489.1| uncharacterized protein [Arabidopsis thaliana]
           gi|21593513|gb|AAM65480.1| unknown [Arabidopsis
           thaliana] gi|111074252|gb|ABH04499.1| At5g26790
           [Arabidopsis thaliana] gi|332006222|gb|AED93605.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 68

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +2

Query: 89  SMFRWFEVNIFYAVRSVPSYMRW--PELGLDSLRWPEFDFSVFFDDMLWTIMVVFETLTL 262
           S  RW+    F +  SVP ++ W  PEL L          SV  DD++W ++  FE++ L
Sbjct: 3   SSIRWWWPIHFTSSGSVPRWLSWRRPELSL---------LSVVVDDVVWKVVTAFESVAL 53

Query: 263 VTAVCFFYVFCGCSI 307
           V+ +CFF++FCGC++
Sbjct: 54  VSMLCFFFLFCGCTV 68


>ref|XP_002872235.1| hypothetical protein ARALYDRAFT_489512 [Arabidopsis lyrata subsp.
           lyrata] gi|297318072|gb|EFH48494.1| hypothetical protein
           ARALYDRAFT_489512 [Arabidopsis lyrata subsp. lyrata]
          Length = 66

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = +2

Query: 89  SMFRWFEVNIFYAVRSVPSYMRW--PELGLDSLRWPEFDFSVFFDDMLWTIMVVFETLTL 262
           S  RW+    F +  S P ++ W  PEL L          SV FDD++W ++  FE++ L
Sbjct: 3   SSIRWWWPIHFTSPGSAPRWLSWRRPELSL---------LSVVFDDVVWKVVTAFESVAL 53

Query: 263 VTAVCFFYVFCGC 301
           V+ +CFF++FCGC
Sbjct: 54  VSMLCFFFLFCGC 66


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