BLASTX nr result

ID: Dioscorea21_contig00021609 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021609
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003563083.1| PREDICTED: ATP-dependent DNA helicase pcrA-l...    84   9e-15
dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]     84   1e-14
gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]          84   1e-14
ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group] g...    84   2e-14
gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japo...    84   2e-14

>ref|XP_003563083.1| PREDICTED: ATP-dependent DNA helicase pcrA-like [Brachypodium
           distachyon]
          Length = 1192

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 61/136 (44%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
 Frame = +3

Query: 114 GFAVDKYHECLQKLNDEPREEAACADISVLLMIMAGTGSRTDMGDCWVCSDAASRAIAPY 293
           G A  KY+E L  LND  RE AAC+D++V LMI+AG GS                     
Sbjct: 301 GCAPRKYYEYLHSLNDRQRE-AACSDVTVPLMILAGPGSGKT------------------ 341

Query: 294 *LYFSDFIGYVQTLILLIRVSSLP--NILALNVTIAAA----DRIGSVRPKEVAKKLSIS 455
               S  +G V TL+       +P  NILA+  T AAA    DRIG+V  K VAK++ IS
Sbjct: 342 ----STMVGRVLTLLK----EGIPPSNILAMTFTTAAAAEMRDRIGAVVGKAVAKEIVIS 393

Query: 456 TFHSFCLQLCR*HTRK 503
           TFHSFCLQLCR H  K
Sbjct: 394 TFHSFCLQLCRNHAEK 409


>dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 774

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 61/134 (45%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
 Frame = +3

Query: 114 GFAVDKYHECLQKLNDEPREEAACADISVLLMIMAGTGSRTDMGDCWVCSDAASRAIAPY 293
           G A  KY+E L  LND+ RE A+C+D++V LMI+AG GS                     
Sbjct: 294 GCAPRKYYEYLHSLNDKQRE-ASCSDVAVPLMIVAGPGSGKT------------------ 334

Query: 294 *LYFSDFIGYVQTLILLIRVSSLPNILALNVTIAAA----DRIGSVRPKEVAKKLSISTF 461
               S  +G V TL  L    S  NILA+  T AAA    DRIG+V  K VAK++ ISTF
Sbjct: 335 ----STMVGRVLTL--LKEGISPSNILAMTFTTAAASEMRDRIGAVVGKAVAKEIIISTF 388

Query: 462 HSFCLQLCR*HTRK 503
           HSFCLQLCR H  K
Sbjct: 389 HSFCLQLCRTHAEK 402


>gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]
          Length = 1185

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 61/134 (45%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
 Frame = +3

Query: 114 GFAVDKYHECLQKLNDEPREEAACADISVLLMIMAGTGSRTDMGDCWVCSDAASRAIAPY 293
           G A  KY+E L  LND+ RE A+C+D++V LMI+AG GS                     
Sbjct: 294 GCAPRKYYEYLHSLNDKQRE-ASCSDVAVPLMIVAGPGSGKT------------------ 334

Query: 294 *LYFSDFIGYVQTLILLIRVSSLPNILALNVTIAAA----DRIGSVRPKEVAKKLSISTF 461
               S  +G V TL  L    S  NILA+  T AAA    DRIG+V  K VAK++ ISTF
Sbjct: 335 ----STMVGRVLTL--LKEGISPSNILAMTFTTAAASEMRDRIGAVVGKAVAKEIIISTF 388

Query: 462 HSFCLQLCR*HTRK 503
           HSFCLQLCR H  K
Sbjct: 389 HSFCLQLCRTHAEK 402


>ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group]
           gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA
           helicase [Oryza sativa Japonica Group]
           gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA
           helicase [Oryza sativa Japonica Group]
           gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa
           Japonica Group] gi|218199642|gb|EEC82069.1| hypothetical
           protein OsI_26061 [Oryza sativa Indica Group]
          Length = 1165

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 60/134 (44%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +3

Query: 114 GFAVDKYHECLQKLNDEPREEAACADISVLLMIMAGTGSRTDMGDCWVCSDAASRAIAPY 293
           G    KY+E LQ LND  RE AAC+D+++ LMI+AG GS                     
Sbjct: 274 GCVPKKYYEYLQSLNDRQRE-AACSDVTIPLMIVAGPGSGKT------------------ 314

Query: 294 *LYFSDFIGYVQTLILLIRVSSLPNILALNVTIAAA----DRIGSVRPKEVAKKLSISTF 461
               S  +G V TL+      S  NILA+  T AAA    DRIG+V  K VAK++ ISTF
Sbjct: 315 ----STMVGRVLTLLKEEFPPS--NILAMTFTTAAASEMRDRIGTVVGKAVAKEIVISTF 368

Query: 462 HSFCLQLCR*HTRK 503
           HSFCLQLCR H  K
Sbjct: 369 HSFCLQLCRTHAEK 382


>gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group]
          Length = 1186

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 60/134 (44%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +3

Query: 114 GFAVDKYHECLQKLNDEPREEAACADISVLLMIMAGTGSRTDMGDCWVCSDAASRAIAPY 293
           G    KY+E LQ LND  RE AAC+D+++ LMI+AG GS                     
Sbjct: 274 GCVPKKYYEYLQSLNDRQRE-AACSDVTIPLMIVAGPGSGKT------------------ 314

Query: 294 *LYFSDFIGYVQTLILLIRVSSLPNILALNVTIAAA----DRIGSVRPKEVAKKLSISTF 461
               S  +G V TL+      S  NILA+  T AAA    DRIG+V  K VAK++ ISTF
Sbjct: 315 ----STMVGRVLTLLKEEFPPS--NILAMTFTTAAASEMRDRIGTVVGKAVAKEIVISTF 368

Query: 462 HSFCLQLCR*HTRK 503
           HSFCLQLCR H  K
Sbjct: 369 HSFCLQLCRTHAEK 382