BLASTX nr result
ID: Dioscorea21_contig00021355
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00021355
(2070 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi... 576 e-162
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera] 574 e-161
ref|XP_002523294.1| pentatricopeptide repeat-containing protein,... 546 e-153
ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi... 536 e-150
ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|2... 525 e-146
>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product
[Vitis vinifera]
Length = 586
Score = 576 bits (1484), Expect = e-162
Identities = 296/538 (55%), Positives = 370/538 (68%), Gaps = 9/538 (1%)
Frame = +2
Query: 8 KATTMSILHRH-----RRFSTIVDLAHLSSPIID-PSH--LTSLRSNSDLLVSYSVTPPL 163
K + S+LH H R ST V A P D PSH L ++ S S LL SY+VTPP+
Sbjct: 35 KPRSTSLLHFHSISAVRSASTAVGAA--VDPFTDHPSHHHLAAVDSKSTLLKSYTVTPPI 92
Query: 164 QPWPSRLSPRHLSRIIRSLPDPLLALRAFHHASHFHPGFXXXXXXXXXXXXXXAHARLFS 343
+PWP RLSP+ + +I + LAL+ F HA FH F + AR F
Sbjct: 93 KPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFE 152
Query: 344 HIPPILSSLRHSSIHCGENLFISLIRAYXXXXXXXXXXXXXXXIPSFRLRASVRSFNALL 523
+ ++S L S I CGENLFI++IR Y IPSF L+ SVRSFN LL
Sbjct: 153 PMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLL 212
Query: 524 NAMIQNRRFHLVPILFKHCQSKFGIIPNVCTANIFLKALCKLGNLDGALKVLDEMPTWGM 703
N ++QN+RF LV ++FK+C+ KFGI+PNV T NI +KALCK ++D A++VL+EMP G
Sbjct: 213 NTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGF 272
Query: 704 VPNVVSYTTILSCYCSLGDLHGAKALFDEILHRGWSPDVTTYTVLIDGYCRAGRLVDAVR 883
+PNVV+YTTIL Y S GD+ GA+ +F EIL RGW PD TTYT+L+DGYC+ GR +DAV+
Sbjct: 273 IPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVK 332
Query: 884 TMDEMDNAGVKPNDVTYSVVIEECCKAKKSGEALNLIQDMLDGKYIPSSTLCCKVIDALC 1063
MDEM+ V+PNDVTY V+IE CK KKSGE LNL+ DML+ KYIPSS LCC+VID LC
Sbjct: 333 VMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLC 392
Query: 1064 EDDKVEDACDIWKKLLKKNVTPDNSISSTLIYWLCKKGKVLEARKLFDEFEKGFIPSLLT 1243
E+ KVE AC++WKKLLKKN TPDN+I+STLI+WLCK+GKV EARKLFDEFEKG IPS LT
Sbjct: 393 EEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLT 452
Query: 1244 YNTLISGMCENGELQEAGRLWDDMSEKKCAPNVFTYNVLIKGFCKVGKAKEGVEILEEML 1423
YN LI+GMCE GEL EA RLWD+M EK C PN FTYN+LIKGFCKVG A+EG+ ++EEML
Sbjct: 453 YNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEML 512
Query: 1424 EKKCMPNKSTYQVLVDGLLNAG-DGDDEMAEKVLCKLVSVGGEFFSKDDWSVFVSKMV 1594
+ C+PNK+TY +L++GL G +G+ VL S GG + W VF++K V
Sbjct: 513 DNGCLPNKATYAILLEGLYELGLEGE---VTNVLSMASSRGG--VDAECWGVFLAKFV 565
>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 574 bits (1480), Expect = e-161
Identities = 295/536 (55%), Positives = 369/536 (68%), Gaps = 9/536 (1%)
Frame = +2
Query: 8 KATTMSILHRH-----RRFSTIVDLAHLSSPIID-PSH--LTSLRSNSDLLVSYSVTPPL 163
K + S+LH H R ST V A P D PSH L ++ S S LL SY+VTPP+
Sbjct: 35 KPRSTSLLHFHSISAVRSASTAVGAA--VDPFTDHPSHHHLAAVDSKSTLLKSYTVTPPI 92
Query: 164 QPWPSRLSPRHLSRIIRSLPDPLLALRAFHHASHFHPGFXXXXXXXXXXXXXXAHARLFS 343
+PWP RLSP+ + +I + LAL+ F HA FH F + AR F
Sbjct: 93 KPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFE 152
Query: 344 HIPPILSSLRHSSIHCGENLFISLIRAYXXXXXXXXXXXXXXXIPSFRLRASVRSFNALL 523
+ ++S L S I CGENLFI++IR Y IPSF L+ SVRSFN LL
Sbjct: 153 PMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLL 212
Query: 524 NAMIQNRRFHLVPILFKHCQSKFGIIPNVCTANIFLKALCKLGNLDGALKVLDEMPTWGM 703
N ++QN+RF LV ++FK+C+ KFGI+PNV T NI +KALCK ++D A++VL+EMP G
Sbjct: 213 NTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGF 272
Query: 704 VPNVVSYTTILSCYCSLGDLHGAKALFDEILHRGWSPDVTTYTVLIDGYCRAGRLVDAVR 883
+PNVV+YTTIL Y S GD+ GA+ +F EIL RGW PD TTYT+L+DGYC+ GR +DAV+
Sbjct: 273 IPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVK 332
Query: 884 TMDEMDNAGVKPNDVTYSVVIEECCKAKKSGEALNLIQDMLDGKYIPSSTLCCKVIDALC 1063
MDEM+ V+PNDVTY V+IE CK KKSGE LNL+ DML+ KYIPSS LCC+VID LC
Sbjct: 333 VMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLC 392
Query: 1064 EDDKVEDACDIWKKLLKKNVTPDNSISSTLIYWLCKKGKVLEARKLFDEFEKGFIPSLLT 1243
E+ KVE AC++WKKLLKKN TPDN+I+STLI+WLCK+GKV EARKLFDEFEKG IPS LT
Sbjct: 393 EEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLT 452
Query: 1244 YNTLISGMCENGELQEAGRLWDDMSEKKCAPNVFTYNVLIKGFCKVGKAKEGVEILEEML 1423
YN LI+GMCE GEL EA RLWD+M EK C PN FTYN+LIKGFCKVG A+EG+ ++EEML
Sbjct: 453 YNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEML 512
Query: 1424 EKKCMPNKSTYQVLVDGLLNAG-DGDDEMAEKVLCKLVSVGGEFFSKDDWSVFVSK 1588
+ C+PNK+TY +L++GL G +G+ VL S GG + W VF++K
Sbjct: 513 DNGCLPNKATYAILLEGLYELGLEGE---VTNVLSMASSRGG--VDAECWGVFLAK 563
>ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537382|gb|EEF39010.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 544
Score = 546 bits (1407), Expect = e-153
Identities = 274/530 (51%), Positives = 359/530 (67%), Gaps = 3/530 (0%)
Frame = +2
Query: 14 TTM--SILHRHRRFSTIVDLAHLSSPIIDPSHLTSLRSNSDLLVSYSVTPPLQPWPSRLS 187
TTM S RHR +T V L H +S + N+ L SY+VTPP++PWP RL
Sbjct: 10 TTMLCSTQSRHRPKTTAVALLHSNS---------TGSPNNPLPESYTVTPPIKPWPQRLY 60
Query: 188 PRHLSRIIRSLPDPLLALRAFHHASHFHPGFXXXXXXXXXXXXXXAHARLFSHIPPILSS 367
P+ L +I + LAL+ F +A + P F + AR+F + +LS
Sbjct: 61 PKRLVSMITRQQNLDLALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSD 120
Query: 368 LRHSSIHCGENLFISLIRAYXXXXXXXXXXXXXXXIPSFRLRASVRSFNALLNAMIQNRR 547
L S I CGEN+FI++IR Y I F ++ SVRS N LLNA +QN+R
Sbjct: 121 LHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKR 180
Query: 548 FHLVPILFKHCQSKFGIIPNVCTANIFLKALCKLGNLDGALKVLDEMPTWGMVPNVVSYT 727
+ LV +FK+C+SK+G++PNV T NI +KALCK +++ A+KVLDEMP GM+PNVV+YT
Sbjct: 181 YDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYT 240
Query: 728 TILSCYCSLGDLHGAKALFDEILHRGWSPDVTTYTVLIDGYCRAGRLVDAVRTMDEMDNA 907
TIL Y S GD+ A +F E+ RGW PD TTYT+L++GYC GRL DA++ MD+M
Sbjct: 241 TILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGEN 300
Query: 908 GVKPNDVTYSVVIEECCKAKKSGEALNLIQDMLDGKYIPSSTLCCKVIDALCEDDKVEDA 1087
GV+PN+VTY V++E CK KK+GEA NL+ DML+ +Y+PSS LCCKVID LCE K+E+A
Sbjct: 301 GVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEA 360
Query: 1088 CDIWKKLLKKNVTPDNSISSTLIYWLCKKGKVLEARKLFDEFEKGFIPSLLTYNTLISGM 1267
C++WK++LKKN PDN+I STLI+WLCK+GKV EARKLF EFE+G IPSLLTYNTLI+GM
Sbjct: 361 CELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLIAGM 420
Query: 1268 CENGELQEAGRLWDDMSEKKCAPNVFTYNVLIKGFCKVGKAKEGVEILEEMLEKKCMPNK 1447
CE GEL EAG+LWDDM EK PN FTYN+LIKGF K+G AKEG+ ILEEML+ +CMPNK
Sbjct: 421 CEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNK 480
Query: 1448 STYQVLVDGLLNAG-DGDDEMAEKVLCKLVSVGGEFFSKDDWSVFVSKMV 1594
STY +L++ L G +G+ +KV+ ++ GG D W +F++K V
Sbjct: 481 STYAILIEELCKMGMEGE---VDKVVSMAMASGG--VDSDSWDLFLNKAV 525
>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 536 bits (1381), Expect = e-150
Identities = 264/487 (54%), Positives = 344/487 (70%)
Frame = +2
Query: 134 LVSYSVTPPLQPWPSRLSPRHLSRIIRSLPDPLLALRAFHHASHFHPGFXXXXXXXXXXX 313
L SY+VTPP++PWP RL P L +IR + LAL+ FH+A +HP F
Sbjct: 34 LQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAII 93
Query: 314 XXXAHARLFSHIPPILSSLRHSSIHCGENLFISLIRAYXXXXXXXXXXXXXXXIPSFRLR 493
+ AR F + +L L+ S I+C E+LFI++IR+Y I +F +R
Sbjct: 94 YRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVR 153
Query: 494 ASVRSFNALLNAMIQNRRFHLVPILFKHCQSKFGIIPNVCTANIFLKALCKLGNLDGALK 673
SVRS N LLNA++QN RF V +LFK+ +SKFG++PNV T NI +KALCK +++GA K
Sbjct: 154 RSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARK 213
Query: 674 VLDEMPTWGMVPNVVSYTTILSCYCSLGDLHGAKALFDEILHRGWSPDVTTYTVLIDGYC 853
V DEMP+ G+VPNVV+YTTIL Y S GD+ GAK +F E+ GW PD TTYT+L+DGY
Sbjct: 214 VFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYV 273
Query: 854 RAGRLVDAVRTMDEMDNAGVKPNDVTYSVVIEECCKAKKSGEALNLIQDMLDGKYIPSST 1033
+ GR DAV+ MDEM+ GV+PND+TY V+I CK +KSGEALNL+ DML+ KYIP+S
Sbjct: 274 KQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSA 333
Query: 1034 LCCKVIDALCEDDKVEDACDIWKKLLKKNVTPDNSISSTLIYWLCKKGKVLEARKLFDEF 1213
LCCKVID LC + +V++AC +W+KLLKKN TPDN+I+STLI+WLCK+G + EARKLF+EF
Sbjct: 334 LCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEF 393
Query: 1214 EKGFIPSLLTYNTLISGMCENGELQEAGRLWDDMSEKKCAPNVFTYNVLIKGFCKVGKAK 1393
E+G I SLLTYNTLI+GMCE GEL EA RLWDDM EK C PN FTYN+LIKGF KVGKAK
Sbjct: 394 ERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAK 453
Query: 1394 EGVEILEEMLEKKCMPNKSTYQVLVDGLLNAGDGDDEMAEKVLCKLVSVGGEFFSKDDWS 1573
E ++++EEML+K C+ N+STY +LV+GLL G ++ + +L ++S G F W+
Sbjct: 454 EVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELL--NILSMIISSGAVDFKA--WN 509
Query: 1574 VFVSKMV 1594
+FV V
Sbjct: 510 LFVPHFV 516
>ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|222858420|gb|EEE95967.1|
predicted protein [Populus trichocarpa]
Length = 498
Score = 525 bits (1352), Expect = e-146
Identities = 260/487 (53%), Positives = 339/487 (69%), Gaps = 4/487 (0%)
Frame = +2
Query: 146 SVTPPLQPWPSRLSPRHLSRIIRSLPDPLLALRAFHHASHFHPGFXXXXXXXXXXXXXXA 325
+VTPP++PWP RL P+ L +I + LA + F +A +HPGF +
Sbjct: 1 TVTPPIKPWPQRLYPKRLISMITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLS 60
Query: 326 HARLFSHIPPILSSLRHSSIH--CGENLFISLIRAYXXXXXXXXXXXXXXXIPS-FRLRA 496
AR F + +LS L +S H CG+++FIS+IR Y I F ++
Sbjct: 61 RARAFDGVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQP 120
Query: 497 SVRSFNALLNAMIQNRRFHLVPILFKHCQSKFGIIPNVCTANIFLKALCKLGNLDGALKV 676
SV+ N LLN +QN+R+HLV K+C+ K+G++PNV + NI +KALCK +++ ALKV
Sbjct: 121 SVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKV 180
Query: 677 LDEMPTWGMVPNVVSYTTILSCYCSLGDLHGAKALFDEILHRGWSPDVTTYTVLIDGYCR 856
DEMPT GM+PN+V+YTTIL + S GDL A+ +F EI +GW PD TTYTVL+ GYC+
Sbjct: 181 FDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCK 240
Query: 857 AGRLVDAVRTMDEMDNAGVKPNDVTYSVVIEECCKAKKSGEALNLIQDMLDGKYIPSSTL 1036
GRL DA++ MD M+ GV+PN+VTY V+I+ CK KKSGEA NLI DMLD K++PSSTL
Sbjct: 241 QGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTL 300
Query: 1037 CCKVIDALCEDDKVEDACDIWKKLLKKNVTPDNSISSTLIYWLCKKGKVLEARKLFDEFE 1216
CCKVID LCED KVE+AC +WK++L+KN PDN+I STLI+WLCK+GKV EARKLFDEFE
Sbjct: 301 CCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFE 360
Query: 1217 KGFIPSLLTYNTLISGMCENGELQEAGRLWDDMSEKKCAPNVFTYNVLIKGFCKVGKAKE 1396
+G IPSL+TYNTLI+GMCE GEL EAGRLWDDM EK+C PN FTYN+LIKGF K G KE
Sbjct: 361 QGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKE 420
Query: 1397 GVEILEEMLEKKCMPNKSTYQVLVDGLLNAG-DGDDEMAEKVLCKLVSVGGEFFSKDDWS 1573
GV ILEEML+ C+PNKSTY +L++GL +G +GD +KV+ +++ D W
Sbjct: 421 GVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGD---VDKVMS--MAMASREVDADSWD 475
Query: 1574 VFVSKMV 1594
+F+ K+V
Sbjct: 476 LFLHKIV 482