BLASTX nr result
ID: Dioscorea21_contig00021353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00021353
(1850 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 818 0.0
ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2... 794 0.0
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec... 784 0.0
ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec... 781 0.0
ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group] g... 769 0.0
>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis] gi|223534732|gb|EEF36424.1| cleavage and
polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 818 bits (2114), Expect = 0.0
Identities = 401/554 (72%), Positives = 456/554 (82%), Gaps = 2/554 (0%)
Frame = +2
Query: 191 MTIECLILGAGQEXXXXXXXXXXXXXNIMFDCGMHMGYLDHRRYPDFSLISQSGDFSSVI 370
M IECL+LGAGQE IMFDCGMHMGY DHRRYPDFSLIS+SGDF S +
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSAL 60
Query: 371 SCIVITHFHLDHVGALPYFTEVCGYNGPIFMTYPTKALAPLMLEDYRKVMVERRGEDEQF 550
C++ITHFHLDHVGALPYFTEVCGYNGP++MTYPTKAL+PLMLEDYRKVMV+RRGE+EQF
Sbjct: 61 HCVIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120
Query: 551 SYEHILKCMKKVTALDLKQTVNVDKDLQIRAYYAGHVLGAAMIYAKVGDSTMVYTGDYNM 730
+ +HI +C+ KV A+DLKQTV VDKDLQIRAYYAGHVLGAAM YAKVGDS MVYTGDYNM
Sbjct: 121 TADHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
Query: 731 TPDRHLGAAQIERLQLDLLITESTYATTIRDSKYAREIEFLKVVHNCIARGGKVLIPTFA 910
TPDRHLGAAQI+RLQLDLLITESTYATTIRDSKYARE EFLKVVH C+A GGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFA 240
Query: 911 LGRAQELCLLLDEYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYATHNAFD 1090
LGRAQELCLLLD+YWERMNLKVPIYFSAGLTIQANMYYKMLI WTSQKIK+TY + NAFD
Sbjct: 241 LGRAQELCLLLDDYWERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNAFD 300
Query: 1091 FKHVCPFERSFINAPGPCVLFATPGMISGGFSLEVFKQWAPTEINLVTLPGYCVAGTIGH 1270
FK+V F+RS ++APGPCVLFATPGMISGGFSLEVFK+WAP E+NLVTLPGYCVAGTIGH
Sbjct: 301 FKNVYTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGH 360
Query: 1271 KLMSGKPTRIDLDKDTHVDVRCQIHQLSFSPHTDAKGIMDLVGLLSPQHVILVHGEKPKM 1450
KLMSGKP++I+LDKDT +DVRCQIHQLSFSPHTDAKGIMDLV LSP+HVILVHGEKPKM
Sbjct: 361 KLMSGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKM 420
Query: 1451 ALLRGRIQTELGIQCYDPANNETVSIPTNRTVKIDATKAFIKSYSVTNFDASSTHLVGFT 1630
A L+ RIQ+EL IQCY PAN ET+ IP+ VK DA++AFI+S NF + L +
Sbjct: 421 ASLKERIQSELEIQCYVPANCETLCIPSTLFVKADASEAFIRSCLSPNFRFLNKSLKDTS 480
Query: 1631 DSNHEDVEILPTL--GEKKAAEGILLMDKTKRAKIVCXXXXXXXXXXXXHSLRLAYCCPV 1804
D L +++ AEGIL+++K K+A++V H ++ AYCCPV
Sbjct: 481 DLVLHSTNATSRLEVSDERVAEGILVVEKNKKARVVHQDELLLMLGAKQHEVQFAYCCPV 540
Query: 1805 HMDCLEQTSHQSTS 1846
+D ++QT +S
Sbjct: 541 QVDNMDQTRRDPSS 554
>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
predicted protein [Populus trichocarpa]
Length = 639
Score = 794 bits (2051), Expect = 0.0
Identities = 393/555 (70%), Positives = 448/555 (80%), Gaps = 6/555 (1%)
Frame = +2
Query: 191 MTIECLILGAGQEXXXXXXXXXXXXXNIMFDCGMHMGYLDHRRYPDFSLISQSGDFSSVI 370
M IECL+LGAGQE IMFDCGMHMGY DHRRYPDFSLIS+S DF +
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSL 60
Query: 371 SCIVITHFHLDHVGALPYFTEVCGYNGPIFMTYPTKALAPLMLEDYRKVMVERRGEDEQF 550
C++ITHFHLDHVGALPYFTEVCGYNGPI+MTYPTKALAPLMLED+RKV+V+RRGE+EQF
Sbjct: 61 DCVIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQF 120
Query: 551 SYEHILKCMKKVTALDLKQTVNVDKDLQIRAYYAGHVLGAAMIYAKVGDSTMVYTGDYNM 730
+ HI +CM+KV A+DLKQTV VD DLQIRAYYAGHVLGAAM YAKVGDS MVYTGDYNM
Sbjct: 121 TSLHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
Query: 731 TPDRHLGAAQIERLQLDLLITESTYATTIRDSKYAREIEFLKVVHNCIARGGKVLIPTFA 910
TPDRHLGAAQI+RL+LDLLITESTYATTIRDSKYARE EFLK VH C+A GGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFA 240
Query: 911 LGRAQELCLLLDEYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYATHNAFD 1090
LGRAQELC+LLD+YWERMNLKVPIYFSAGLTIQAN+YYK+LISWTSQK+K+TYAT NAFD
Sbjct: 241 LGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNAFD 300
Query: 1091 FKHVCPFERSFINAPGPCVLFATPGMISGGFSLEVFKQWAPTEINLVTLPGYCVAGTIGH 1270
FKHV F+RS INAPGPCVLFATPGMISGGFSLEVFKQWAP E+NL+TLPGYCVAGT+GH
Sbjct: 301 FKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGH 360
Query: 1271 KLMSGKPTRIDLDKDTHVDVRCQIHQLSFSPHTDAKGIMDLVGLLSPQHVILVHGEKPKM 1450
KLMSGKPT+I+LDKDT +DVRCQIHQLSFSPHTD+KGIMDL LSP++VILVHGEKPKM
Sbjct: 361 KLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFLSPRNVILVHGEKPKM 420
Query: 1451 ALLRGRIQTELGIQCYDPANNETVSIPTNRTVKIDATKAFIKSYSVTNFDASSTHLVGFT 1630
L+ RIQTEL I CY PAN + V IP+ VK A+ FI+S NF L
Sbjct: 421 VSLKERIQTELRIPCYLPANCDAVHIPSTIYVKAHASNTFIRSCLNPNF----RFLKRSK 476
Query: 1631 DSNHEDV--EILPT----LGEKKAAEGILLMDKTKRAKIVCXXXXXXXXXXXXHSLRLAY 1792
+ N + V PT + +++ AEGIL+M+K K+A++V H ++ AY
Sbjct: 477 EDNSDQVLRNTNPTAPLQVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAY 536
Query: 1793 CCPVHMDCLEQTSHQ 1837
CC +D LE+T ++
Sbjct: 537 CCAAQLDNLEETRNR 551
>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 784 bits (2024), Expect = 0.0
Identities = 375/552 (67%), Positives = 448/552 (81%), Gaps = 7/552 (1%)
Frame = +2
Query: 191 MTIECLILGAGQEXXXXXXXXXXXXXNIMFDCGMHMGYLDHRRYPDFSLISQSGDFSSVI 370
M I+CL+LGAGQE IMFDCGMH+GY+DHRRYPDFS IS S D+++V+
Sbjct: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVL 60
Query: 371 SCIVITHFHLDHVGALPYFTEVCGYNGPIFMTYPTKALAPLMLEDYRKVMVERRGEDEQF 550
SCI+ITHFHLDH+GALPYFTEVCGYNGPI+MTYPT ALAP+ LEDYRKVMV+RRGE EQF
Sbjct: 61 SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120
Query: 551 SYEHILKCMKKVTALDLKQTVNVDKDLQIRAYYAGHVLGAAMIYAKVGDSTMVYTGDYNM 730
+ +HI++C+KKV +DLKQT+ VD+DLQIRAYYAGHVLGAAM YAKVGD+ MVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
Query: 731 TPDRHLGAAQIERLQLDLLITESTYATTIRDSKYAREIEFLKVVHNCIARGGKVLIPTFA 910
TPDRHLGAAQI+R+QLDLLITESTYATTIRDSKYARE EFLK VHNC+A GGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240
Query: 911 LGRAQELCLLLDEYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYATHNAFD 1090
LGRAQELC+LLD+YWERMNLK PIY SAGLT+QANMYYKMLISWTSQK+K+TY T NAFD
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300
Query: 1091 FKHVCPFERSFINAPGPCVLFATPGMISGGFSLEVFKQWAPTEINLVTLPGYCVAGTIGH 1270
FK+V F+RS I+APGPCVLFATPGMIS GFSLEVFK+WAP+++NL+TLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360
Query: 1271 KLMSGKPTRIDLDKDTHVDVRCQIHQLSFSPHTDAKGIMDLVGLLSPQHVILVHGEKPKM 1450
KLMSGKPT+IDLDK T +DV+CQ+HQL+FSPHTD+KGIMDLV LSP+HVILVHGEKPKM
Sbjct: 361 KLMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 420
Query: 1451 ALLRGRIQTELGIQCYDPANNETVSIPTNRTVKIDATKAFIKSYSVTNFDASSTHLV--- 1621
A+L+ RI +ELGI C+DPANNETVSI + +VK +A+ FI+S S NF +L+
Sbjct: 421 AVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLIDPD 480
Query: 1622 ----GFTDSNHEDVEILPTLGEKKAAEGILLMDKTKRAKIVCXXXXXXXXXXXXHSLRLA 1789
+ ++ I + + + EGIL+M+ K+ K + H +R A
Sbjct: 481 LKDLSYKAERTSNMLIPLQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQQEHEVRFA 540
Query: 1790 YCCPVHMDCLEQ 1825
+C P++ L++
Sbjct: 541 HCRPIYFGSLDE 552
>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 781 bits (2018), Expect = 0.0
Identities = 387/553 (69%), Positives = 442/553 (79%), Gaps = 12/553 (2%)
Frame = +2
Query: 191 MTIECLILGAGQEXXXXXXXXXXXXXNIMFDCGMHMGYLDHRRYPDFSLI----SQSGDF 358
M IECL+LGAGQE IMFDCGMHMGY D RYPDF+ I ++ DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDF 60
Query: 359 SSVISCIVITHFHLDHVGALPYFTEVCGYNGPIFMTYPTKALAPLMLEDYRKVMVERRGE 538
+S ISC++ITHFHLDH+GALPYFTEVCGY+GPI+MTYPTKALAPLMLEDYRKVMV++RGE
Sbjct: 61 TSAISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGE 120
Query: 539 DEQFSYEHILKCMKKVTALDLKQTVNVDKDLQIRAYYAGHVLGAAMIYAKVGDSTMVYTG 718
+EQ+SYE IL+CMKKV +DLKQT+ V++DL IRAYYAGHVLGAAM+YAKVGD+ MVYTG
Sbjct: 121 EEQYSYEDILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTG 180
Query: 719 DYNMTPDRHLGAAQIERLQLDLLITESTYATTIRDSKYAREIEFLKVVHNCIARGGKVLI 898
DYNMTPDRHLGAAQIERL+LDLLITESTYA TIRDSK+ARE EFLK VH C++ GGKVLI
Sbjct: 181 DYNMTPDRHLGAAQIERLKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLI 240
Query: 899 PTFALGRAQELCLLLDEYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYATH 1078
PTFALGRAQELC+LLD+YWERMNLK+PIYFSAGLTIQANMYYKMLI WTSQKIKD+Y
Sbjct: 241 PTFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQ 300
Query: 1079 NAFDFKHVCPFERSFINAPGPCVLFATPGMISGGFSLEVFKQWAPTEINLVTLPGYCVAG 1258
N FDFKHVC FERSFIN PGPCVLFATPGMISGGFSLEVFK+WA ++ NLVTLPGYCVAG
Sbjct: 301 NPFDFKHVCHFERSFINDPGPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVAG 360
Query: 1259 TIGHKLMSGKPTRIDLDKDTHVDVRCQIHQLSFSPHTDAKGIMDLVGLLSPQHVILVHGE 1438
TIGHKLMSGKPTRID+DKDTHVDVRCQIHQLSFSPHTD+KGIMDL LSP HVILVHGE
Sbjct: 361 TIGHKLMSGKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTEFLSPNHVILVHGE 420
Query: 1439 KPKMALLRGRIQTELGIQCYDPANNETVSIPTNRTVKIDATKAFIKSY-------SVTNF 1597
KP+MA L+ RI++ELG+ CY PANNETVSIPT + +KI AT+ FI + S+
Sbjct: 421 KPQMAFLKDRIESELGMSCYYPANNETVSIPTTQNMKISATEKFITNCAALQARDSLQKS 480
Query: 1598 D-ASSTHLVGFTDSNHEDVEILPTLGEKKAAEGILLMDKTKRAKIVCXXXXXXXXXXXXH 1774
D SS HL G + +++ AEGILLM+K+K KI+C H
Sbjct: 481 DLISSIHLSGVNE-------------DERLAEGILLMEKSKAPKILCEDEFLKLLGTDRH 527
Query: 1775 SLRLAYCCPVHMD 1813
S++ P ++
Sbjct: 528 SVQFEPLLPSRIE 540
>ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza
sativa Japonica Group] gi|113631340|dbj|BAF25021.1|
Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein
OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein
OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 770 bits (1987), Expect = 0.0
Identities = 376/519 (72%), Positives = 433/519 (83%), Gaps = 5/519 (0%)
Frame = +2
Query: 191 MTIECLILGAGQEXXXXXXXXXXXXXN-IMFDCGMHMGYLDHRRYPDFSLISQSG--DFS 361
M IECL+LGAGQE +MFDCGMHMG+ D RRYPDF + G D++
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYT 60
Query: 362 SVISCIVITHFHLDHVGALPYFTEVCGYNGPIFMTYPTKALAPLMLEDYRKVMVERRGED 541
+ ISC+VITHFHLDH+GALPYFTEVCGY+GP++MTYPTKALAPLMLEDYRKVMV+ RGE+
Sbjct: 61 AAISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEE 120
Query: 542 EQFSYEHILKCMKKVTALDLKQTVNVDKDLQIRAYYAGHVLGAAMIYAKVGDSTMVYTGD 721
EQ+SYE IL+CM+KV LDLKQT+ VDKDL IRAYYAGHVLGAAMIYAKVGD+ +VYTGD
Sbjct: 121 EQYSYEDILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGD 180
Query: 722 YNMTPDRHLGAAQIERLQLDLLITESTYATTIRDSKYAREIEFLKVVHNCIARGGKVLIP 901
YNMTPDRHLGAAQI+RL+LDLLITESTYA T+RDSK+ARE EFLK VH C++ GGKVLIP
Sbjct: 181 YNMTPDRHLGAAQIDRLKLDLLITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIP 240
Query: 902 TFALGRAQELCLLLDEYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYATHN 1081
FALGRAQELC+LLD+YWERMNLK+PIYFSAGLTIQANMYYKMLI WTSQKIK++Y HN
Sbjct: 241 AFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVHN 300
Query: 1082 AFDFKHVCPFERSFINAPGPCVLFATPGMISGGFSLEVFKQWAPTEINLVTLPGYCVAGT 1261
FDFKHVC FERSFIN PGPCVLFATPGMISGGFSLEVFK+WAP+E NLVTLPGYCVAGT
Sbjct: 301 PFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGT 360
Query: 1262 IGHKLMSGKPTRIDLDKDTHVDVRCQIHQLSFSPHTDAKGIMDLVGLLSPQHVILVHGEK 1441
IGHKLMSGKPTRID+DKDTH+DVRCQIHQLSFSPHTD+KGIMDL LSP HVILVHGEK
Sbjct: 361 IGHKLMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFLSPSHVILVHGEK 420
Query: 1442 PKMALLRGRIQTELGIQCYDPANNETVSIPTNRTVKIDATKAFIKSYSV--TNFDASSTH 1615
P+MA L+ RI++ELG+QC PANNETVSIPT++ +KI+AT+ FI S+ + T D +
Sbjct: 421 PQMAFLKERIESELGMQCCYPANNETVSIPTSQNLKINATEKFIVSFCMDETENDPQKQN 480
Query: 1616 LVGFTDSNHEDVEILPTLGEKKAAEGILLMDKTKRAKIV 1732
L + ++ + AEG+LLM+K+K KI+
Sbjct: 481 L-------NFGGDMPQGCRTEGVAEGVLLMEKSKTPKIL 512