BLASTX nr result

ID: Dioscorea21_contig00021300 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021300
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8H252.1|RBR_COCNU RecName: Full=Retinoblastoma-related prote...   180   1e-43
emb|CBI20795.3| unnamed protein product [Vitis vinifera]              161   6e-38
ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-li...   161   6e-38
sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related prote...   156   1e-36
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li...   154   1e-35

>sp|Q8H252.1|RBR_COCNU RecName: Full=Retinoblastoma-related protein
           gi|23429044|gb|AAM77469.1| retinoblastoma-like protein
           [Cocos nucifera]
          Length = 1011

 Score =  180 bits (457), Expect = 1e-43
 Identities = 88/114 (77%), Positives = 98/114 (85%), Gaps = 1/114 (0%)
 Frame = -1

Query: 343 VDFFKEMPQFYLKVGYILVSLYGSDWEKRLELKELQADIVHLRALSRYYRQAYQEFFMPS 164
           VDFFKE+PQF LK GYIL  LYGSDWEKRLELKELQA+IVHL  LSRYY++AYQE F+P+
Sbjct: 116 VDFFKEIPQFCLKAGYILTGLYGSDWEKRLELKELQANIVHLSLLSRYYKRAYQELFLPN 175

Query: 163 Q-SSGPHSAFCNNKGYISDYHRF*WLLFLALRVHAFSQFKDLVTCTNGLVSILA 5
             SSG HS   N+ GY+SDYH F WLLFLALR+HAFS+FKDLVTCTNGLVSILA
Sbjct: 176 DASSGRHSVAPNSVGYVSDYHHFGWLLFLALRIHAFSRFKDLVTCTNGLVSILA 229


>emb|CBI20795.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score =  161 bits (407), Expect = 6e-38
 Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
 Frame = -1

Query: 343 VDFFKEMPQFYLKVGYILVSLYGSDWEKRLELKELQADIVHLRALSRYYRQAYQEFFMPS 164
           VDFFKE+PQF +KVG IL +LYG DWEKRLE KELQA+ VHL  LS+YY++AY EFF  S
Sbjct: 110 VDFFKELPQFIVKVGPILGNLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTS 169

Query: 163 QSS-GPHSAFCNNKGYISDYHRF*WLLFLALRVHAFSQFKDLVTCTNGLVSILA 5
            S+    S+  +  GY+SDYHRF WLLFLALRVHAFS+FKDLVTCTNGLVSILA
Sbjct: 170 GSNLDKQSSVISASGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILA 223


>ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera]
           gi|254789791|sp|A7P514.1|RBR_VITVI RecName:
           Full=Retinoblastoma-related protein
           gi|359392418|gb|AEV45768.1| RBR protein [Vitis
           pseudoreticulata]
          Length = 1007

 Score =  161 bits (407), Expect = 6e-38
 Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
 Frame = -1

Query: 343 VDFFKEMPQFYLKVGYILVSLYGSDWEKRLELKELQADIVHLRALSRYYRQAYQEFFMPS 164
           VDFFKE+PQF +KVG IL +LYG DWEKRLE KELQA+ VHL  LS+YY++AY EFF  S
Sbjct: 111 VDFFKELPQFIVKVGPILGNLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTS 170

Query: 163 QSS-GPHSAFCNNKGYISDYHRF*WLLFLALRVHAFSQFKDLVTCTNGLVSILA 5
            S+    S+  +  GY+SDYHRF WLLFLALRVHAFS+FKDLVTCTNGLVSILA
Sbjct: 171 GSNLDKQSSVISASGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILA 224


>sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related protein
           gi|89111303|dbj|BAE80326.1| retinoblastoma related
           protein [Camellia sinensis]
          Length = 1025

 Score =  156 bits (395), Expect = 1e-36
 Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
 Frame = -1

Query: 343 VDFFKEMPQFYLKVGYILVSLYGSDWEKRLELKELQADIVHLRALSRYYRQAYQEFFMPS 164
           VDFFKE+PQF +K G IL + YG+DWEKRLE KELQA+ VHL  LS+YY++A++EFF+ S
Sbjct: 121 VDFFKELPQFIVKAGPILSNQYGTDWEKRLEAKELQANFVHLSLLSKYYKRAFREFFLTS 180

Query: 163 QSS-GPHSAFCNNKGYISDYHRF*WLLFLALRVHAFSQFKDLVTCTNGLVSILA 5
            +  G  S      GY+SDYHRF WLLFLALR HAFS+FKDLVTCTNGLV+ILA
Sbjct: 181 DAKVGEQSTAAIASGYVSDYHRFGWLLFLALRTHAFSRFKDLVTCTNGLVAILA 234


>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1125

 Score =  154 bits (388), Expect = 1e-35
 Identities = 75/114 (65%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
 Frame = -1

Query: 343 VDFFKEMPQFYLKVGYILVSLYGSDWEKRLELKELQADIVHLRALSRYYRQAYQEFFMPS 164
           V+FFKE+PQF +K G +L +LYG+DWE RLE KELQA+ VHL  LS+YY++ Y+EFF  +
Sbjct: 220 VEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTN 279

Query: 163 QSS-GPHSAFCNNKGYISDYHRF*WLLFLALRVHAFSQFKDLVTCTNGLVSILA 5
            ++    SA     GY+SDYHRF WLLFLALRVHAFS+FKDLVTCTNGLVSILA
Sbjct: 280 DANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILA 333


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