BLASTX nr result

ID: Dioscorea21_contig00021265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021265
         (752 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608622.1| Zinc finger protein LSD1 [Medicago truncatul...   206   4e-51
gb|AFK36740.1| unknown [Lotus japonicus]                              205   7e-51
emb|CAF05902.1| zinc finger protein [Oryza sativa Japonica Group...   203   3e-50
ref|NP_001061042.1| Os08g0159500 [Oryza sativa Japonica Group] g...   203   3e-50
gb|AAS13688.1| zinc finger protein LSD1 [Oryza sativa Japonica G...   203   3e-50

>ref|XP_003608622.1| Zinc finger protein LSD1 [Medicago truncatula]
           gi|217075072|gb|ACJ85896.1| unknown [Medicago
           truncatula] gi|217075520|gb|ACJ86120.1| unknown
           [Medicago truncatula] gi|355509677|gb|AES90819.1| Zinc
           finger protein LSD1 [Medicago truncatula]
           gi|388499772|gb|AFK37952.1| unknown [Medicago
           truncatula] gi|388500106|gb|AFK38119.1| unknown
           [Medicago truncatula]
          Length = 154

 Score =  206 bits (524), Expect = 4e-51
 Identities = 99/113 (87%), Positives = 100/113 (88%)
 Frame = -3

Query: 621 QSQLVCSGCRNLLLYPVGXXXXXXXXXXXXTNVPPPGTEMAQLVCGGCHTLLMYIRGATS 442
           QSQLVCSGCRNLL+YPVG            T VPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 31  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 90

Query: 441 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 283
           VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS
Sbjct: 91  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 143


>gb|AFK36740.1| unknown [Lotus japonicus]
          Length = 145

 Score =  205 bits (522), Expect = 7e-51
 Identities = 98/113 (86%), Positives = 100/113 (88%)
 Frame = -3

Query: 621 QSQLVCSGCRNLLLYPVGXXXXXXXXXXXXTNVPPPGTEMAQLVCGGCHTLLMYIRGATS 442
           QSQLVCSGCRNLL+YPVG            T+VPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82

Query: 441 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 283
           VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 83  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135


>emb|CAF05902.1| zinc finger protein [Oryza sativa Japonica Group]
           gi|215767175|dbj|BAG99403.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218200506|gb|EEC82933.1| hypothetical protein
           OsI_27897 [Oryza sativa Indica Group]
           gi|222639951|gb|EEE68083.1| hypothetical protein
           OsJ_26122 [Oryza sativa Japonica Group]
          Length = 143

 Score =  203 bits (517), Expect = 3e-50
 Identities = 97/114 (85%), Positives = 99/114 (86%)
 Frame = -3

Query: 621 QSQLVCSGCRNLLLYPVGXXXXXXXXXXXXTNVPPPGTEMAQLVCGGCHTLLMYIRGATS 442
           QSQLVCSGCRNLL+YP G            T VP PGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 22  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 81

Query: 441 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 280
           VQCSCCHTVNLA+EANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP
Sbjct: 82  VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 135


>ref|NP_001061042.1| Os08g0159500 [Oryza sativa Japonica Group]
           gi|122222103|sp|Q0J7V9.1|LSD1_ORYSJ RecName:
           Full=Protein LSD1; AltName: Full=Protein LESION
           SIMULATING DISEASE 1; Short=OsLSD1; AltName:
           Full=Putative zinc finger LSD1
           gi|113623011|dbj|BAF22956.1| Os08g0159500 [Oryza sativa
           Japonica Group] gi|215767174|dbj|BAG99402.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 184

 Score =  203 bits (517), Expect = 3e-50
 Identities = 97/114 (85%), Positives = 99/114 (86%)
 Frame = -3

Query: 621 QSQLVCSGCRNLLLYPVGXXXXXXXXXXXXTNVPPPGTEMAQLVCGGCHTLLMYIRGATS 442
           QSQLVCSGCRNLL+YP G            T VP PGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 441 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 280
           VQCSCCHTVNLA+EANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP
Sbjct: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 176


>gb|AAS13688.1| zinc finger protein LSD1 [Oryza sativa Japonica Group]
          Length = 143

 Score =  203 bits (517), Expect = 3e-50
 Identities = 97/114 (85%), Positives = 99/114 (86%)
 Frame = -3

Query: 621 QSQLVCSGCRNLLLYPVGXXXXXXXXXXXXTNVPPPGTEMAQLVCGGCHTLLMYIRGATS 442
           QSQLVCSGCRNLL+YP G            T VP PGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 22  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 81

Query: 441 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 280
           VQCSCCHTVNLA+EANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP
Sbjct: 82  VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASP 135


Top