BLASTX nr result

ID: Dioscorea21_contig00021175 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021175
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulga...    85   6e-17
ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein A...    90   2e-16
ref|XP_003562103.1| PREDICTED: uncharacterized protein LOC100844...    89   3e-16
emb|CCA66222.1| hypothetical protein [Beta vulgaris subsp. vulga...    89   5e-16
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...    86   3e-15

>emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 84.7 bits (208), Expect(2) = 6e-17
 Identities = 39/82 (47%), Positives = 57/82 (69%)
 Frame = -2

Query: 298 PFRVGDLPISGGRPRRQDWDILLNKIITRLASWKAKLLSLGGRLTLVNSVLTAIPTYWMS 119
           PF    LPI     + + WD ++NKI  +LA+WK ++LS+GGRLTL+ S L+ +P Y+MS
Sbjct: 743 PFTYLGLPIGENIHKIKAWDPIINKISMKLATWKGRMLSIGGRLTLIKSSLSNLPLYFMS 802

Query: 118 IFKLPTWVIKNIDKIRRDFLWS 53
           +F +P  V++ I+KI R FLWS
Sbjct: 803 LFPIPKGVVEKINKITRRFLWS 824



 Score = 27.3 bits (59), Expect(2) = 6e-17
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 338 CNAGSLPITYLGIPI 294
           C  G +P TYLG+PI
Sbjct: 737 CKTGDIPFTYLGLPI 751


>ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 549

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
 Frame = -2

Query: 307 LAFPFRVGDLPISGGRPRR-QDWDILLNKIITRLASWKAKLLSLGGRLTLVNSVLTAIPT 131
           ++FPF    +PI G  PRR Q W+ L+NK   +LA WK + LS GGR+ L+NSVLT+IP 
Sbjct: 151 MSFPFTYLGIPI-GANPRRCQMWEPLINKCERKLAGWKQRHLSFGGRVILINSVLTSIPI 209

Query: 130 YWMSIFKLPTWVIKNIDKIRRDFLWSSPEPQHNKIRLFSYERL 2
           Y++S F++P  VI  I +++R+FLW     Q NKI    +E++
Sbjct: 210 YFLSFFRVPRQVISKITRLQRNFLWGGAADQ-NKIPWIKWEKV 251


>ref|XP_003562103.1| PREDICTED: uncharacterized protein LOC100844438 [Brachypodium
            distachyon]
          Length = 2492

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 41/89 (46%), Positives = 60/89 (67%)
 Frame = -2

Query: 301  FPFRVGDLPISGGRPRRQDWDILLNKIITRLASWKAKLLSLGGRLTLVNSVLTAIPTYWM 122
            FP +   LP+   +PRR +   LL+K+  +L +WK KL++  GRL L+NSVLTA  TY++
Sbjct: 1717 FPCKYLGLPLGFRKPRRVEIQPLLDKMAMKLQNWKGKLINRAGRLVLINSVLTATTTYFL 1776

Query: 121  SIFKLPTWVIKNIDKIRRDFLWSSPEPQH 35
            +IF   +W IK +DK+RR+FLW+  E  H
Sbjct: 1777 TIFPADSWAIKKMDKMRRNFLWAGDEQAH 1805


>emb|CCA66222.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1383

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 43/106 (40%), Positives = 71/106 (66%)
 Frame = -2

Query: 319  LSLTLAFPFRVGDLPISGGRPRRQDWDILLNKIITRLASWKAKLLSLGGRLTLVNSVLTA 140
            L  T + PF+   LPI G   R   WD +++++  RLA+WK K+LS+GGR+TL+ + L++
Sbjct: 736  LCRTGSLPFKYLGLPIGGNLSRIDTWDPIVDRMGKRLATWKGKMLSIGGRITLIKASLSS 795

Query: 139  IPTYWMSIFKLPTWVIKNIDKIRRDFLWSSPEPQHNKIRLFSYERL 2
            +P Y+MS+F +P  VI  + +I+R+FLWS  E +   + L ++E+L
Sbjct: 796  LPLYFMSLFPIPKGVIDKLVRIQRNFLWSGVEGK-RALPLVAWEKL 840


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 38/84 (45%), Positives = 59/84 (70%)
 Frame = -2

Query: 304 AFPFRVGDLPISGGRPRRQDWDILLNKIITRLASWKAKLLSLGGRLTLVNSVLTAIPTYW 125
           + PF    LPI G   R + W+ +L +I  +L SWK +LLS+GGR+TL+ S ++++P Y+
Sbjct: 741 SLPFNYLGLPIGGDSSRIKTWEPILERISKKLDSWKGRLLSIGGRVTLIKSSISSLPLYF 800

Query: 124 MSIFKLPTWVIKNIDKIRRDFLWS 53
           MS+F +P  VI+ I+K++R FLWS
Sbjct: 801 MSLFPIPRSVIEQINKLQRHFLWS 824


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