BLASTX nr result

ID: Dioscorea21_contig00021125 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00021125
         (835 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protei...   168   1e-39
ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycin...   159   6e-37
gb|AFK40678.1| unknown [Lotus japonicus]                              157   4e-36
ref|XP_002318331.1| predicted protein [Populus trichocarpa] gi|2...   149   6e-34
ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitoch...   137   2e-30

>ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
           gi|296088019|emb|CBI35302.3| unnamed protein product
           [Vitis vinifera]
          Length = 170

 Score =  168 bits (426), Expect = 1e-39
 Identities = 82/104 (78%), Positives = 94/104 (90%)
 Frame = +1

Query: 277 VACLPSTPKISITPRTRLFVSGLSFRTTEDSLRNAFQPFGQLVEVNLVMDRIANRPRGFA 456
           VACLPS+P     P+TRL+VSGLSFRTTE+SLRNAF+ FGQLVEVNLVMD+IANRPRGFA
Sbjct: 64  VACLPSSPNQPSIPKTRLYVSGLSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFA 123

Query: 457 FLRYATEEESKKAIDGMHGKFLDGRVIFVEVARPRSELHPDSKR 588
           FLRY+TEEES+KAI+GMHGKFLDGRVIFVEVA+PRSEL  +  +
Sbjct: 124 FLRYSTEEESEKAIEGMHGKFLDGRVIFVEVAKPRSELRQNQNQ 167


>ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
           gi|255625921|gb|ACU13305.1| unknown [Glycine max]
          Length = 180

 Score =  159 bits (403), Expect = 6e-37
 Identities = 84/117 (71%), Positives = 98/117 (83%), Gaps = 8/117 (6%)
 Frame = +1

Query: 271 TTVACLP-------STPKISI-TPRTRLFVSGLSFRTTEDSLRNAFQPFGQLVEVNLVMD 426
           + +ACLP       ST K S  +P+T+L+VSGLSFRTTE+SLRNAF+ FGQLVEV LVMD
Sbjct: 63  SVLACLPPESSTSSSTAKPSFPSPQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMD 122

Query: 427 RIANRPRGFAFLRYATEEESKKAIDGMHGKFLDGRVIFVEVARPRSELHPDSKRNPK 597
           RIANRPRGFAFLRYATEEES+KAI+GMHGKFLDGRVIFVEVA+PRSEL P  + + +
Sbjct: 123 RIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELAPRKQEDTR 179


>gb|AFK40678.1| unknown [Lotus japonicus]
          Length = 187

 Score =  157 bits (396), Expect = 4e-36
 Identities = 78/104 (75%), Positives = 89/104 (85%)
 Frame = +1

Query: 289 PSTPKISITPRTRLFVSGLSFRTTEDSLRNAFQPFGQLVEVNLVMDRIANRPRGFAFLRY 468
           PS    S  P TRL+VSGLSFRTTE+SLRN F+ FGQLV+VNLVMD++ANRPRGFAFLRY
Sbjct: 83  PSAKPSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRY 142

Query: 469 ATEEESKKAIDGMHGKFLDGRVIFVEVARPRSELHPDSKRNPKQ 600
           ATEEES+KAI+GMHGKFLDGRVIFVEVA+PRSEL    ++N  Q
Sbjct: 143 ATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQ 186


>ref|XP_002318331.1| predicted protein [Populus trichocarpa] gi|222859004|gb|EEE96551.1|
           predicted protein [Populus trichocarpa]
          Length = 181

 Score =  149 bits (377), Expect = 6e-34
 Identities = 75/105 (71%), Positives = 90/105 (85%), Gaps = 5/105 (4%)
 Frame = +1

Query: 271 TTVACLPSTPKISIT-----PRTRLFVSGLSFRTTEDSLRNAFQPFGQLVEVNLVMDRIA 435
           + +ACLPS+     +      +T+L+VSGLSFRTTE+SLRNAFQ FGQLV+VNLVMD++A
Sbjct: 68  SVLACLPSSASSPSSFGFNFRKTKLYVSGLSFRTTEESLRNAFQNFGQLVDVNLVMDKVA 127

Query: 436 NRPRGFAFLRYATEEESKKAIDGMHGKFLDGRVIFVEVARPRSEL 570
            RPRGFAFLRY TEEE++KAI+GMHGKFLDGRVIFVEVA+PRSEL
Sbjct: 128 KRPRGFAFLRYETEEEAQKAIEGMHGKFLDGRVIFVEVAKPRSEL 172


>ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Cucumis
           sativus]
          Length = 175

 Score =  137 bits (346), Expect = 2e-30
 Identities = 74/111 (66%), Positives = 88/111 (79%), Gaps = 5/111 (4%)
 Frame = +1

Query: 274 TVACLPSTPKISITPR-----TRLFVSGLSFRTTEDSLRNAFQPFGQLVEVNLVMDRIAN 438
           +VAC+ S+P  S +PR     TRL++SGLSFRTTE+SLRNAF+ FGQLVEVNLVMDR+AN
Sbjct: 68  SVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLAN 127

Query: 439 RPRGFAFLRYATEEESKKAIDGMHGKFLDGRVIFVEVARPRSELHPDSKRN 591
           RPRGFAFLRYA+EEES+KAI+GMHGK       FVEVA+ RSEL    + N
Sbjct: 128 RPRGFAFLRYASEEESQKAIEGMHGK-----GDFVEVAKSRSELRQGLEEN 173


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