BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00020567
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group] g...   216   2e-54
ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea ma...   214   6e-54
ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [S...   212   3e-53
ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [S...   212   3e-53
ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II su...   209   2e-52

>ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
           gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA
           polymerase II 13.6K chain [Oryza sativa Japonica Group]
           gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa
           Japonica Group] gi|215704597|dbj|BAG94225.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 120

 Score =  216 bits (550), Expect = 2e-54
 Identities = 101/117 (86%), Positives = 112/117 (95%)
 Frame = +3

Query: 6   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTVEREDHTIGNILRMQLHRDPNVLFAG 185
           MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFT+EREDHTIGNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAG 60

Query: 186 YKLPHPLQYKIIVRIHTTNQSSPSQAYNQAISDLDKELEHLKKVFEEEKSRYEVKPR 356
           YKLPHPLQYKI+VR+HT NQS+P+QAY QAI+DLDKELE+LK+ FE+EK RYE +P+
Sbjct: 61  YKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAFEDEKIRYEERPK 117


>ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
           gi|194696560|gb|ACF82364.1| unknown [Zea mays]
           gi|194699868|gb|ACF84018.1| unknown [Zea mays]
           gi|194706942|gb|ACF87555.1| unknown [Zea mays]
           gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase
           II subunit J [Zea mays] gi|195628620|gb|ACG36140.1|
           DNA-directed RNA polymerase II subunit J [Zea mays]
           gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase
           II subunit J [Zea mays] gi|413937791|gb|AFW72342.1|
           DNA-directed RNA polymerase II subunit J isoform 1 [Zea
           mays] gi|413937792|gb|AFW72343.1| DNA-directed RNA
           polymerase II subunit J isoform 2 [Zea mays]
           gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase
           II subunit J isoform 3 [Zea mays]
           gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase
           II subunit J isoform 4 [Zea mays]
           gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase
           II subunit J isoform 5 [Zea mays]
          Length = 120

 Score =  214 bits (545), Expect = 6e-54
 Identities = 102/113 (90%), Positives = 110/113 (97%)
 Frame = +3

Query: 6   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTVEREDHTIGNILRMQLHRDPNVLFAG 185
           MNAPDRYERFVVPEGTKKVSYERDTKIVNA SFTVEREDHT+GNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAG 60

Query: 186 YKLPHPLQYKIIVRIHTTNQSSPSQAYNQAISDLDKELEHLKKVFEEEKSRYE 344
           YKLPHPLQYKIIVRIHTT+QSSP+QAY QAI+DLDKELE+LK+ FE+EK+RYE
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFEDEKNRYE 113


>ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
           gi|241938640|gb|EES11785.1| hypothetical protein
           SORBIDRAFT_06g001360 [Sorghum bicolor]
          Length = 117

 Score =  212 bits (539), Expect = 3e-53
 Identities = 99/114 (86%), Positives = 112/114 (98%)
 Frame = +3

Query: 6   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTVEREDHTIGNILRMQLHRDPNVLFAG 185
           MNAPDRYERFVVPEGTKKVSYERDTKIVNA SFT+EREDHTIGNI+RMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAG 60

Query: 186 YKLPHPLQYKIIVRIHTTNQSSPSQAYNQAISDLDKELEHLKKVFEEEKSRYEV 347
           YKLPHPLQYKIIVRIHTT+QSSP+QAY+QA++DLDKELE+LK+ FE+EK+R+E+
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPTQAYSQAVNDLDKELEYLKQAFEDEKNRFEM 114


>ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
           gi|241924662|gb|EER97806.1| hypothetical protein
           SORBIDRAFT_02g000210 [Sorghum bicolor]
          Length = 120

 Score =  212 bits (539), Expect = 3e-53
 Identities = 100/113 (88%), Positives = 110/113 (97%)
 Frame = +3

Query: 6   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTVEREDHTIGNILRMQLHRDPNVLFAG 185
           MNAPDRYERFVVPEGTKKVSYERDTKIVNA SFTVEREDHT+GNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAG 60

Query: 186 YKLPHPLQYKIIVRIHTTNQSSPSQAYNQAISDLDKELEHLKKVFEEEKSRYE 344
           YKLPHPLQYKIIVRIHT +QSSP+QAY+QA++DLDKELE+LK+ FE+EK+RYE
Sbjct: 61  YKLPHPLQYKIIVRIHTMSQSSPTQAYSQAVNDLDKELEYLKQAFEDEKNRYE 113


>ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           isoform 1 [Brachypodium distachyon]
           gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB11-like isoform 2
           [Brachypodium distachyon]
          Length = 119

 Score =  209 bits (532), Expect = 2e-52
 Identities = 98/119 (82%), Positives = 112/119 (94%)
 Frame = +3

Query: 6   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTVEREDHTIGNILRMQLHRDPNVLFAG 185
           MNAPDRYERFVVPEGTKKVS+E+DTKI+NA SFT+EREDHTIGNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60

Query: 186 YKLPHPLQYKIIVRIHTTNQSSPSQAYNQAISDLDKELEHLKKVFEEEKSRYEVKPRDY 362
           YKLPHPLQYKIIVRIHT +QSSP+QAYNQAI+DLD ELE+LK+ FE+EK+R+E + + Y
Sbjct: 61  YKLPHPLQYKIIVRIHTASQSSPTQAYNQAINDLDSELENLKQAFEDEKNRFEERKQPY 119