BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00019491
         (1157 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...   195   2e-47
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...   168   2e-39
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...   161   3e-37
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...   149   2e-33
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                 124   3e-26

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
            predicted protein [Populus trichocarpa]
          Length = 702

 Score =  195 bits (496), Expect = 2e-47
 Identities = 116/296 (39%), Positives = 182/296 (61%), Gaps = 2/296 (0%)
 Frame = +1

Query: 271  NMLLVCFLPKTAKVKDLIQAFGDSGPISEICILPSRE--NRFNYAQVFFKTKEGLKKALS 444
            N LL+ FL K     D+I  F + GPIS+I  + S +  N F+ A + F+T++GL KAL 
Sbjct: 405  NKLLLRFLHKDVGDGDIISCFRNCGPISKIEKVSSVKGSNLFD-AFLHFETRQGLHKALE 463

Query: 445  KTDVAVGGADVAMEAAITPSEICDRMFCTERVNNAYSPRHFLKHPSRTVVLDGLIPDDLS 624
            K +V +  ++  +       +   R+     + +       +KHP+RTV +  L  DD+S
Sbjct: 464  KPEVLIKNSNAFIH------DTASRISIPNLIGDIDISVALVKHPTRTVKIKQLT-DDIS 516

Query: 625  NYDLKCALSTWGRITSIVNGTSYHTVFVEFESEKSKERALAKATFSISGRTLSILRVDAP 804
            ++ LK ALS      ++  G S    +VEFESE +KERALAK    +SG+ LSI RVDAP
Sbjct: 517  SHQLKEALSFCRSGINVFLGASSSNAYVEFESEDAKERALAKHFLQVSGKQLSIFRVDAP 576

Query: 805  KTTIIRISNVNPASGAIEVHSICDSYGKVKKVTERYIDTFDIHFKLSEWPNMLKIINSLN 984
            +TT++RI N+NP   +  V +IC S+GK+ ++  R+ +  D++FK+ EWPNML I+NSLN
Sbjct: 577  RTTVVRILNINPQCRS-NVLTICKSFGKLWRMKLRHENIADVYFKIDEWPNMLNILNSLN 635

Query: 985  GLKVDQHKWIAQPATLIPVEVLQALWNKPEGQKQVHELVRNICERINDESIDTSSL 1152
            GL+ D  +W+AQPA++ P  +LQALWN P+ ++ V   ++ + +++ +  +DT+ L
Sbjct: 636  GLEADGSRWVAQPASIFPPIILQALWNHPDERRHVISSMQCLLKKL-EHPMDTAEL 690


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329267|gb|EFH59686.1| nucleic acid binding protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score =  168 bits (426), Expect = 2e-39
 Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 10/380 (2%)
 Frame = +1

Query: 13   NMPYEVTESEENEDSNCLKLETILLDKDEKAVDTSDGLNSLFISDESDSDISAFEYPN-- 186
            N+P +     +    N    E   + K   A   SDG  +    +ES  +    E  +  
Sbjct: 396  NLPTDNGMDAQANSLNASSSEEKSISKSNSAFQKSDGFCATE-EEESKGETLVMENQSLC 454

Query: 187  ------PEPNNEVLSSMKGFHLNLNQHNEKLARNNMLLVCFLPKTAKVKDLIQAFGDSGP 348
                      N  ++    F L+  +H+      N +L+ FL ++ + K +++ F   G 
Sbjct: 455  SQATLAATTANPKVTKKSLFALSAGEHSP-----NKVLLRFLQESCQKKHIVEVFSQFGA 509

Query: 349  ISEICILPSRENR-FNYAQVFFKTKEGLKKALSKTDVAVGGADVAMEAAITPSEICDRMF 525
            +  +  +PS E   +  A + F+T   +KKAL K  V V   +  +EA  +  ++ +R+ 
Sbjct: 510  VLHVQEIPSFEGCIYKDALLTFETNTAVKKALEKGRVTVMNNNAVVEAT-SQEDMVERIC 568

Query: 526  CTERVNNAYSPRHFLKHPSRTVVLDGLIPDDLSNYDLKCALSTWGRITSIVNGTSYHTVF 705
              + + +   P   +K PSRTV +  L  D  SN   +        I+  + G+S    F
Sbjct: 569  IPDLIGDPDVPVALVKEPSRTVKIHPLTHDFSSNQIKEALKFCRSNISKFILGSSRTDAF 628

Query: 706  VEFESEKSKERALAKATFSISGRTLSILRVDAPKTTIIRISNVNPASGAIEVHSICDSYG 885
            VEFE+E  KERALA+ + SI    L I R+D P+TT+ RISN++  S   +V ++C  YG
Sbjct: 629  VEFETEDGKERALAEHSISICNTQLFISRIDIPRTTVARISNLS-KSAMKDVRALCVPYG 687

Query: 886  KVKKVTERYIDTFDIHFKLSEWPNMLKIINSLNGLKVDQHKWIAQPA-TLIPVEVLQALW 1062
            ++K+V  R     D+ F +SEWPNML I+NSLNG+ +D  K + +PA T+IP E+L+ LW
Sbjct: 688  QIKQVYIRGNGVVDVLFDVSEWPNMLNILNSLNGMGIDGKKLVVRPATTVIPPEILRVLW 747

Query: 1063 NKPEGQKQVHELVRNICERI 1122
              P+ ++ V  +++N+   I
Sbjct: 748  KDPQEKRYVKSVIQNLVREI 767


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|11994322|dbj|BAB02281.1| unnamed protein product
            [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
            recognition motif-containing protein [Arabidopsis
            thaliana]
          Length = 811

 Score =  161 bits (408), Expect = 3e-37
 Identities = 98/287 (34%), Positives = 161/287 (56%), Gaps = 3/287 (1%)
 Frame = +1

Query: 271  NMLLVCFLPKTAKVKDLIQAFGDS-GPISEICILPSRENR-FNYAQVFFKTKEGLKKALS 444
            N +L+ FLP+++  K +++AF    G +  +  +PS E   +  A + F+T   +KKAL 
Sbjct: 509  NKVLLRFLPESSMKKHIVKAFSSQFGAVLHVQEIPSIEGCIYKDALLTFETNTAVKKALK 568

Query: 445  KTDVAVGGADVAMEAAITPSEICDRMFCTERVNNAYSPRHFLKHPSRTVVLDGLIPDDLS 624
            K  V V   +  +EA  +  ++ +R+   + + +   P   +K P+RTV +  L  D  S
Sbjct: 569  KGHVTVMNYNTVVEAT-SQEDMVERICIPDLIGDPDVPVALVKEPARTVKIHPLTHDFSS 627

Query: 625  NYDLKCALSTWGRITSIVNGTSYHTVFVEFESEKSKERALAKATFSISGRTLSILRVDAP 804
            N   +        I+    G+S    FVEFE+E  KERALA+ + SI    L I R+D P
Sbjct: 628  NQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDIP 687

Query: 805  KTTIIRISNVNPASGAIEVHSICDSYGKVKKVTERYIDTFDIHFKLSEWPNMLKIINSLN 984
            +T + RISN++  S   +V ++C  YG+++ V  R     D+ F +SEWPNML I+NS+N
Sbjct: 688  RTIVARISNLS-KSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILNSMN 746

Query: 985  GLKVDQHKWIAQPA-TLIPVEVLQALWNKPEGQKQVHELVRNICERI 1122
            G+++D  K + +PA T+IP E+L+ LW  P  ++ V  +++N+   I
Sbjct: 747  GMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREI 793


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|332643237|gb|AEE76758.1| RNA recognition
            motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score =  149 bits (375), Expect = 2e-33
 Identities = 90/262 (34%), Positives = 145/262 (55%), Gaps = 2/262 (0%)
 Frame = +1

Query: 343  GPISEICILPSRENR-FNYAQVFFKTKEGLKKALSKTDVAVGGADVAMEAAITPSEICDR 519
            G +  +  +PS E   +  A + F+T   +KKAL K  V V   +  +EA  +  ++ +R
Sbjct: 494  GAVLHVQEIPSIEGCIYKDALLTFETNTAVKKALKKGHVTVMNYNTVVEAT-SQEDMVER 552

Query: 520  MFCTERVNNAYSPRHFLKHPSRTVVLDGLIPDDLSNYDLKCALSTWGRITSIVNGTSYHT 699
            +   + + +   P   +K P+RTV +  L  D  SN   +        I+    G+S   
Sbjct: 553  ICIPDLIGDPDVPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTD 612

Query: 700  VFVEFESEKSKERALAKATFSISGRTLSILRVDAPKTTIIRISNVNPASGAIEVHSICDS 879
             FVEFE+E  KERALA+ + SI    L I R+D P+T + RISN++  S   +V ++C  
Sbjct: 613  AFVEFETEDGKERALAEHSISICNTQLFISRIDIPRTIVARISNLS-KSAMRDVRALCVP 671

Query: 880  YGKVKKVTERYIDTFDIHFKLSEWPNMLKIINSLNGLKVDQHKWIAQPA-TLIPVEVLQA 1056
            YG+++ V  R     D+ F +SEWPNML I+NS+NG+++D  K + +PA T+IP E+L+ 
Sbjct: 672  YGQIRGVYIRGTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRV 731

Query: 1057 LWNKPEGQKQVHELVRNICERI 1122
            LW  P  ++ V  +++N+   I
Sbjct: 732  LWKDPREKRYVKSVIQNLVREI 753


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score =  124 bits (312), Expect = 3e-26
 Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
 Frame = +1

Query: 598  DGLIPDDLSNYDLKCALSTWGRITSIVNGTSYHTVFVEFESEKSKERALAKATFSISGRT 777
            DG   + LSN   +        I+    G+S    FVEFE+E  KERALA+ + SI    
Sbjct: 34   DGRKCERLSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQ 93

Query: 778  LSILRVDAPKTTIIRISNVNPASGAIEVHSICDSYGKVKKVTERYIDTFDIHFKLSEWPN 957
            L I R+D P+T + RISN++  S   +V ++C  YG+++ V  R     D+ F +SEWPN
Sbjct: 94   LFISRIDIPRTIVARISNLSK-SAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPN 152

Query: 958  MLKIINSLNGLKVDQHKWIAQPA-TLIPVEVLQALWNKPEGQKQVHELVRNICERI 1122
            ML I+NS+NG+++D  K + +PA T+IP E+L+ LW  P  ++ V  +++N+   I
Sbjct: 153  MLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREI 208