BLASTX nr result

ID: Dioscorea21_contig00019385 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00019385
         (670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285023.2| PREDICTED: uncharacterized protein LOC100267...   114   2e-23
ref|XP_002524440.1| RNA binding protein, putative [Ricinus commu...   114   2e-23
ref|XP_003550833.1| PREDICTED: uncharacterized protein LOC100795...   112   9e-23
ref|XP_003525657.1| PREDICTED: uncharacterized protein LOC100809...   110   3e-22
ref|XP_003609252.1| RNA binding protein [Medicago truncatula] gi...   104   1e-20

>ref|XP_002285023.2| PREDICTED: uncharacterized protein LOC100267997 [Vitis vinifera]
          Length = 415

 Score =  114 bits (285), Expect = 2e-23
 Identities = 65/116 (56%), Positives = 79/116 (68%), Gaps = 23/116 (19%)
 Frame = +2

Query: 125 SMTCHVGA---------------SSSPSD-----EVDSCCGSGREES---LPINEVLAAE 235
           S+TC VG+               S+ PS+     + +S C  G EE    LP  E LAAE
Sbjct: 295 SVTCSVGSCSITSNNPYKLLHHFSTGPSENDDCSDAESFCRLGYEEGNCLLPTKEELAAE 354

Query: 236 VHKLELYAYRSTMEALYASGPLSWEQETLMTNLRLMLHISNDEHLMELRQLVSAEM 403
           +H+LEL+AYR T+EAL+ASGPLSWEQETL+TNLRL LHISNDEHLMELR LVSA++
Sbjct: 355 IHRLELHAYRCTIEALHASGPLSWEQETLVTNLRLSLHISNDEHLMELRNLVSADI 410


>ref|XP_002524440.1| RNA binding protein, putative [Ricinus communis]
           gi|223536228|gb|EEF37880.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 383

 Score =  114 bits (285), Expect = 2e-23
 Identities = 65/136 (47%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
 Frame = +2

Query: 2   RKPSNDVEYDYITCVEPNDVGTMXXXXXXXXXXXXRYMPLHSMTCHVGASSSPSDEVDSC 181
           RK S  V       V+ ND  ++             Y  +H     +        + +S 
Sbjct: 242 RKQSGAVGCSSAIEVDSNDEESITSSVGSCSTTSNNYYKMHHRAGFIEDIDGNFSDAESF 301

Query: 182 CGSGREES---LPINEVLAAEVHKLELYAYRSTMEALYASGPLSWEQETLMTNLRLMLHI 352
           C  G EE     P NE LAAEVH+LEL+AYR TMEALYASGP SWEQE ++TNLRL LHI
Sbjct: 302 CHRGYEEGTNCFPTNEELAAEVHRLELHAYRCTMEALYASGPFSWEQEEMVTNLRLSLHI 361

Query: 353 SNDEHLMELRQLVSAE 400
           SNDEHLME+R LVSA+
Sbjct: 362 SNDEHLMEVRNLVSAD 377


>ref|XP_003550833.1| PREDICTED: uncharacterized protein LOC100795963 [Glycine max]
          Length = 404

 Score =  112 bits (279), Expect = 9e-23
 Identities = 65/117 (55%), Positives = 76/117 (64%), Gaps = 25/117 (21%)
 Frame = +2

Query: 125 SMTCHVGA---------------SSSPSDEVDSC-------CGSGREE---SLPINEVLA 229
           S+TC VG+               S+ P D+VDS        C    EE   S P  E LA
Sbjct: 282 SITCSVGSCSITSRNSCKLQFPVSAGPFDDVDSSFSDAESVCQRSDEEGDCSPPTQEELA 341

Query: 230 AEVHKLELYAYRSTMEALYASGPLSWEQETLMTNLRLMLHISNDEHLMELRQLVSAE 400
           AE+H+LEL+AYR T+EAL+ASGPLSWEQE LMTNLRL LHISNDEHLMELR L+S+E
Sbjct: 342 AEIHRLELHAYRCTIEALHASGPLSWEQEALMTNLRLSLHISNDEHLMELRNLISSE 398


>ref|XP_003525657.1| PREDICTED: uncharacterized protein LOC100809539 [Glycine max]
          Length = 397

 Score =  110 bits (274), Expect = 3e-22
 Identities = 64/118 (54%), Positives = 75/118 (63%), Gaps = 25/118 (21%)
 Frame = +2

Query: 122 HSMTCHVGASS---------------SPSDEVDSC-------CGSGREE---SLPINEVL 226
           +S+TC VG+ S                P D+VDS        C    EE   S P  E L
Sbjct: 274 YSVTCSVGSCSITSRNSYKSQFPVYAGPFDDVDSSFSDAESVCQRSDEEGNCSPPTQEEL 333

Query: 227 AAEVHKLELYAYRSTMEALYASGPLSWEQETLMTNLRLMLHISNDEHLMELRQLVSAE 400
           AAE+H+LEL+AY  T+EAL+ASGPLSWEQE LMTNLRL LHISNDEHLMELR L+S+E
Sbjct: 334 AAEIHRLELHAYHCTIEALHASGPLSWEQEALMTNLRLSLHISNDEHLMELRNLISSE 391


>ref|XP_003609252.1| RNA binding protein [Medicago truncatula]
           gi|355510307|gb|AES91449.1| RNA binding protein
           [Medicago truncatula]
          Length = 468

 Score =  104 bits (260), Expect = 1e-20
 Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 10/102 (9%)
 Frame = +2

Query: 125 SMTCHVGASSSPSDEVDSC-------CGSGREE---SLPINEVLAAEVHKLELYAYRSTM 274
           S+TC VG   SP ++VDS        C  G  E   S P  + LA ++H+LEL+AYR T+
Sbjct: 281 SVTCSVG---SPFEDVDSSYSDAESTCKRGYMEATCSRPTRKELAMKIHRLELHAYRCTI 337

Query: 275 EALYASGPLSWEQETLMTNLRLMLHISNDEHLMELRQLVSAE 400
           EAL+ASGPLSWEQE LMTNLRL L+ISNDEHL ELR L+S+E
Sbjct: 338 EALFASGPLSWEQEALMTNLRLSLNISNDEHLTELRNLISSE 379


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