BLASTX nr result
ID: Dioscorea21_contig00019370
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00019370
(465 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI15653.3| unnamed protein product [Vitis vinifera] 56 2e-23
ref|XP_002283698.1| PREDICTED: 60S ribosomal protein L17-2-like ... 56 2e-23
ref|NP_001062701.1| Os09g0258600 [Oryza sativa Japonica Group] g... 56 1e-20
gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida] 55 3e-20
ref|XP_002514927.1| protein with unknown function [Ricinus commu... 55 3e-20
>emb|CBI15653.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 56.2 bits (134), Expect(4) = 2e-23
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = -1
Query: 321 NLPGLDVDTLYISNTQVNQAQKQKGRTCRAHGRIN 217
+L GLDVD+LY+S+ QVNQAQKQ+ RT RAHGRIN
Sbjct: 130 DLKGLDVDSLYVSHIQVNQAQKQRRRTYRAHGRIN 164
Score = 49.3 bits (116), Expect(4) = 2e-23
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 397 RYCRGVGCTVLAKNHHPNGLGCWPVKSARF 308
R+CRGVG T AKN H NG G WPVKSA+F
Sbjct: 88 RFCRGVGRTAQAKNRHSNGQGRWPVKSAKF 117
Score = 35.8 bits (81), Expect(4) = 2e-23
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2
Query: 461 RESENPTKSSKAMGRGLRVHFK 396
RE +NPTKS KA G LRVHFK
Sbjct: 32 REPDNPTKSCKARGSDLRVHFK 53
Score = 32.3 bits (72), Expect(4) = 2e-23
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2
Query: 215 PDIQLAPRKMKKSTQALHSDASS 147
PD QLAPRK KK TQAL S ASS
Sbjct: 188 PDTQLAPRKTKK-TQALRSGASS 209
>ref|XP_002283698.1| PREDICTED: 60S ribosomal protein L17-2-like isoform 1 [Vitis
vinifera] gi|359491070|ref|XP_003634214.1| PREDICTED:
60S ribosomal protein L17-2-like isoform 2 [Vitis
vinifera]
Length = 183
Score = 56.2 bits (134), Expect(4) = 2e-23
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = -1
Query: 321 NLPGLDVDTLYISNTQVNQAQKQKGRTCRAHGRIN 217
+L GLDVD+LY+S+ QVNQAQKQ+ RT RAHGRIN
Sbjct: 104 DLKGLDVDSLYVSHIQVNQAQKQRRRTYRAHGRIN 138
Score = 49.3 bits (116), Expect(4) = 2e-23
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 397 RYCRGVGCTVLAKNHHPNGLGCWPVKSARF 308
R+CRGVG T AKN H NG G WPVKSA+F
Sbjct: 62 RFCRGVGRTAQAKNRHSNGQGRWPVKSAKF 91
Score = 35.8 bits (81), Expect(4) = 2e-23
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2
Query: 461 RESENPTKSSKAMGRGLRVHFK 396
RE +NPTKS KA G LRVHFK
Sbjct: 6 REPDNPTKSCKARGSDLRVHFK 27
Score = 32.3 bits (72), Expect(4) = 2e-23
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2
Query: 215 PDIQLAPRKMKKSTQALHSDASS 147
PD QLAPRK KK TQAL S ASS
Sbjct: 162 PDTQLAPRKTKK-TQALRSGASS 183
>ref|NP_001062701.1| Os09g0258600 [Oryza sativa Japonica Group] gi|315113261|pdb|3IZR|V
Chain V, Localization Of The Large Subunit Ribosomal
Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome gi|48716232|dbj|BAD23438.1|
putative ribosomal protein L17 [Oryza sativa Japonica
Group] gi|48717064|dbj|BAD23752.1| putative ribosomal
protein L17 [Oryza sativa Japonica Group]
gi|113630934|dbj|BAF24615.1| Os09g0258600 [Oryza sativa
Japonica Group] gi|125562954|gb|EAZ08334.1| hypothetical
protein OsI_30588 [Oryza sativa Indica Group]
gi|125604912|gb|EAZ43948.1| hypothetical protein
OsJ_28568 [Oryza sativa Japonica Group]
gi|215704153|dbj|BAG92993.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215740435|dbj|BAG97091.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215767717|dbj|BAG99945.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 171
Score = 56.2 bits (134), Expect(3) = 1e-20
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -1
Query: 312 GLDVDTLYISNTQVNQAQKQKGRTCRAHGRIN 217
GLDVDTLY+S+ QVNQAQKQ+ RT RAHGRIN
Sbjct: 107 GLDVDTLYVSHIQVNQAQKQRRRTYRAHGRIN 138
Score = 45.8 bits (107), Expect(3) = 1e-20
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = -3
Query: 397 RYCRGVGCTVLAKNHHPNGLGCWPVKSARF 308
RYC GVG T AK+ H NG G WP KSARF
Sbjct: 62 RYCGGVGRTAQAKSRHSNGQGRWPAKSARF 91
Score = 42.4 bits (98), Expect(3) = 1e-20
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -2
Query: 461 RESENPTKSSKAMGRGLRVHFK 396
RE+ NPTKSSKAMGR LRVHFK
Sbjct: 6 REANNPTKSSKAMGRDLRVHFK 27
>gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida]
Length = 175
Score = 55.1 bits (131), Expect(4) = 3e-20
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -1
Query: 312 GLDVDTLYISNTQVNQAQKQKGRTCRAHGRIN 217
GLDVD+LYIS+ QVNQAQKQ+ RT RAHGRIN
Sbjct: 107 GLDVDSLYISHIQVNQAQKQRRRTYRAHGRIN 138
Score = 48.9 bits (115), Expect(4) = 3e-20
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -3
Query: 400 SRYCRGVGCTVLAKNHHPNGLGCWPVKSARF 308
+R+CRGVG T AKN H NG G WPVKSA F
Sbjct: 61 TRFCRGVGRTAQAKNRHSNGQGRWPVKSANF 91
Score = 37.0 bits (84), Expect(4) = 3e-20
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 461 RESENPTKSSKAMGRGLRVHFK 396
RE ENPTKS KA G LRVHFK
Sbjct: 6 REPENPTKSCKARGSDLRVHFK 27
Score = 21.9 bits (45), Expect(4) = 3e-20
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 215 PDIQLAPRKMKKS 177
P+ QLAPRK K S
Sbjct: 162 PETQLAPRKTKAS 174
>ref|XP_002514927.1| protein with unknown function [Ricinus communis]
gi|223545978|gb|EEF47481.1| protein with unknown function
[Ricinus communis]
Length = 1086
Score = 54.7 bits (130), Expect(4) = 3e-20
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 312 GLDVDTLYISNTQVNQAQKQKGRTCRAHGRIN 217
GLDVD LYIS+ QVNQAQKQ+ RT RAHGRIN
Sbjct: 1009 GLDVDALYISHIQVNQAQKQRRRTYRAHGRIN 1040
Score = 46.6 bits (109), Expect(4) = 3e-20
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = -3
Query: 397 RYCRGVGCTVLAKNHHPNGLGCWPVKSARF 308
R+C GVG T AKN H NG G WPVKSA+F
Sbjct: 964 RFCGGVGRTAQAKNRHSNGQGRWPVKSAKF 993
Score = 37.0 bits (84), Expect(4) = 3e-20
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 461 RESENPTKSSKAMGRGLRVHFK 396
RE ENPTKS KA G LRVHFK
Sbjct: 908 REPENPTKSCKARGSDLRVHFK 929
Score = 24.3 bits (51), Expect(4) = 3e-20
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 215 PDIQLAPRKMKKSTQALHSDASS 147
P+ QLA K +QAL S ASS
Sbjct: 1064 PETQLATSNKPKKSQALRSGASS 1086