BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00019127
         (1389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   409   e-112
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   405   e-110
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   401   e-109
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              400   e-109
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   398   e-108

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  409 bits (1051), Expect = e-112
 Identities = 205/302 (67%), Positives = 247/302 (81%)
 Frame = -3

Query: 1072 MAANSSLEIDGDMEVDAFRRLFPLRYYEHYLGQSVRPDARPLAHARETTIALGPVTSVDG 893
            ++AN S ++  +MEVDAFRRLFPLRY+E +L  S+RPDARPL  AR+T++ALG V S DG
Sbjct: 2    VSANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADG 61

Query: 892  SALVKIGETTMLAAIKLEVMTPAADLPDKGCLAVDFYMPPVCTPNVRPGRPAEAAPVISK 713
            SAL KIG TTMLAA+K+EVMTP  + PD+G +A++FYMPP+C+P VRPGRPAE APV+SK
Sbjct: 62   SALAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSK 121

Query: 712  QLSDVILSSGMINFEELSLISGKAAWMAYLDIYCLNADGSLFDAALLSAVAAFSHLKVPL 533
            QLSD ILSSGMIN +ELSL+SGKAAWMAYLDIYCL+ADGSLFDAALL+AVAAFSHL++P+
Sbjct: 122  QLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPV 181

Query: 532  VSVNDNGRVTTVTGXXXXXXXXXXLVNKERRKLSFKSLPFSLTCLLHDKYILADPTAEEE 353
            VS+N+ GRV  V+            VNK +RKL+  SLPFSLTC+LH  YILADPTAEEE
Sbjct: 182  VSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEE 241

Query: 352  DIMDTLVTVVVDSLGRLVSLYKAGGVVLANTSTVKDCIALAKRRAAELHHILVESISEME 173
             IM+TLVTVV+DS G+LVSLYK GG VLA  S V+DCIAL ++R  EL  IL E+IS+ME
Sbjct: 242  SIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDME 301

Query: 172  VD 167
            VD
Sbjct: 302  VD 303


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
            gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
            complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  405 bits (1040), Expect = e-110
 Identities = 202/304 (66%), Positives = 246/304 (80%)
 Frame = -3

Query: 1078 VGMAANSSLEIDGDMEVDAFRRLFPLRYYEHYLGQSVRPDARPLAHARETTIALGPVTSV 899
            +G+   +S ++   MEVDAFRRLFP+++YE +L +S+RPD R L  AR+TTIALGPV+S 
Sbjct: 1    MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 898  DGSALVKIGETTMLAAIKLEVMTPAADLPDKGCLAVDFYMPPVCTPNVRPGRPAEAAPVI 719
            +GSAL KIG TTMLAAIK+EVMTP+ + PD+GC+A+DF+MPPVC+P VRPGRPAEAAPVI
Sbjct: 61   NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 718  SKQLSDVILSSGMINFEELSLISGKAAWMAYLDIYCLNADGSLFDAALLSAVAAFSHLKV 539
            SKQLSD I SSGMI+  ELSL+ GKAAWMAYLDIYCL+ADGSLFDAALLSA AAFSHL++
Sbjct: 121  SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 538  PLVSVNDNGRVTTVTGXXXXXXXXXXLVNKERRKLSFKSLPFSLTCLLHDKYILADPTAE 359
            P+V++ND+G+V  V             VNKE RKL   S+PFSLTCLLH KYILADPTAE
Sbjct: 181  PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 240

Query: 358  EEDIMDTLVTVVVDSLGRLVSLYKAGGVVLANTSTVKDCIALAKRRAAELHHILVESISE 179
            EE +M+T+VTVV+DS G+LVS YK GG VLA TS V+DCIAL ++R+ EL  IL E+IS 
Sbjct: 241  EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 178  MEVD 167
            ME+D
Sbjct: 301  MEID 304


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
            tuberosum]
          Length = 314

 Score =  401 bits (1031), Expect = e-109
 Identities = 201/300 (67%), Positives = 243/300 (81%)
 Frame = -3

Query: 1069 AANSSLEIDGDMEVDAFRRLFPLRYYEHYLGQSVRPDARPLAHARETTIALGPVTSVDGS 890
            AAN S ++  +MEVDAFRRLFPLRY+EH+L +SVRPDAR L  AR+TT+ALG V S DGS
Sbjct: 3    AANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASADGS 62

Query: 889  ALVKIGETTMLAAIKLEVMTPAADLPDKGCLAVDFYMPPVCTPNVRPGRPAEAAPVISKQ 710
            AL KIG TTMLAAIK+EVMTP  + PD+G +A++F+MPP+C+P VRPGRPAEAA VISKQ
Sbjct: 63   ALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQ 122

Query: 709  LSDVILSSGMINFEELSLISGKAAWMAYLDIYCLNADGSLFDAALLSAVAAFSHLKVPLV 530
            LSD ILSSGMI+ +EL L+ GKAAWMAYLDIYCL+ADG+LFD ALLSAVAAFSHL +P+V
Sbjct: 123  LSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIPVV 182

Query: 529  SVNDNGRVTTVTGXXXXXXXXXXLVNKERRKLSFKSLPFSLTCLLHDKYILADPTAEEED 350
            S+ND+GR+  V+            VN E+RKL   SLPFSLTC+LH  YILADPTAEEE 
Sbjct: 183  SLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEEEP 242

Query: 349  IMDTLVTVVVDSLGRLVSLYKAGGVVLANTSTVKDCIALAKRRAAELHHILVESISEMEV 170
            IM+T+VTVV+DS  +LVSL K GG VL++TS ++DCI LA+RRA EL  +L E+IS+MEV
Sbjct: 243  IMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDMEV 302


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  400 bits (1027), Expect = e-109
 Identities = 204/310 (65%), Positives = 246/310 (79%), Gaps = 8/310 (2%)
 Frame = -3

Query: 1072 MAANSSLEIDGDMEVDAFRRLFPLRYYEHYLGQSVRPDARPLAHARETTIALGPVTSVDG 893
            ++AN S ++  +MEVDAFRRLFPLRY+E +L  S+RPDARPL  AR+T++ALG V S DG
Sbjct: 2    VSANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADG 61

Query: 892  SALVKIGETTMLAAIKLEVMTPAADLPDKGCLAVDFYMPPVCTPNVRPGRPAEAAPVISK 713
            SAL KIG TTMLAA+K+EVMTP  + PD+G +A++FYMPP+C+P VRPGRPAE APV+SK
Sbjct: 62   SALAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSK 121

Query: 712  QLSDVILS--------SGMINFEELSLISGKAAWMAYLDIYCLNADGSLFDAALLSAVAA 557
            QLSD IL         SGMIN +ELSL+SGKAAWMAYLDIYCL+ADGSLFDAALL+AVAA
Sbjct: 122  QLSDTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAA 181

Query: 556  FSHLKVPLVSVNDNGRVTTVTGXXXXXXXXXXLVNKERRKLSFKSLPFSLTCLLHDKYIL 377
            FSHL++P+VS+N+ GRV  V+            VNK +RKL+  SLPFSLTC+LH  YIL
Sbjct: 182  FSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYIL 241

Query: 376  ADPTAEEEDIMDTLVTVVVDSLGRLVSLYKAGGVVLANTSTVKDCIALAKRRAAELHHIL 197
            ADPTAEEE IM+TLVTVV+DS G+LVSLYK GG VLA  S V+DCIAL ++R  EL  IL
Sbjct: 242  ADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSIL 301

Query: 196  VESISEMEVD 167
             E+IS+MEVD
Sbjct: 302  NEAISDMEVD 311


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
            gi|223528261|gb|EEF30313.1| exosome complex exonuclease
            rrp43, putative [Ricinus communis]
          Length = 303

 Score =  398 bits (1022), Expect = e-108
 Identities = 193/299 (64%), Positives = 245/299 (81%)
 Frame = -3

Query: 1063 NSSLEIDGDMEVDAFRRLFPLRYYEHYLGQSVRPDARPLAHARETTIALGPVTSVDGSAL 884
            N S ++  +ME DAFRRLFPL ++E +L +S+RPD R L  AR+TT+ALG V S DGSA+
Sbjct: 5    NVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSADGSAI 64

Query: 883  VKIGETTMLAAIKLEVMTPAADLPDKGCLAVDFYMPPVCTPNVRPGRPAEAAPVISKQLS 704
             KIG TTM+AAIK+EVMTP+++ PD+GC+A+DF+MPP+C+P VRPGRPAEAAPV+SKQLS
Sbjct: 65   AKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLS 124

Query: 703  DVILSSGMINFEELSLISGKAAWMAYLDIYCLNADGSLFDAALLSAVAAFSHLKVPLVSV 524
            D I+SS MI+ +ELSL+SGKAAWMAYLDIYCL+ADGSLFDAAL SAVAAF++L++P+VS+
Sbjct: 125  DTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSL 184

Query: 523  NDNGRVTTVTGXXXXXXXXXXLVNKERRKLSFKSLPFSLTCLLHDKYILADPTAEEEDIM 344
            ND+G+V  V+            VNKE+RKL+ +SLPFSLTC+LH  YILADPTAEEE IM
Sbjct: 185  NDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEEESIM 244

Query: 343  DTLVTVVVDSLGRLVSLYKAGGVVLANTSTVKDCIALAKRRAAELHHILVESISEMEVD 167
            +TLVTVV+DS  RLVS YK GG VLA TS V+DC+AL ++R  EL +IL E++S M++D
Sbjct: 245  ETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGMQID 303