BLASTX nr result

ID: Dioscorea21_contig00017878 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00017878
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACO24432.1| riboflavin biosynthesis protein [Elaeis oleifera]       64   1e-08
ref|XP_004160211.1| PREDICTED: riboflavin biosynthesis protein r...    60   2e-07
ref|XP_004150928.1| PREDICTED: riboflavin biosynthesis protein r...    60   2e-07
ref|XP_003543930.1| PREDICTED: riboflavin biosynthesis protein r...    60   2e-07
ref|XP_002534352.1| GTP cyclohydrolase II, putative [Ricinus com...    59   3e-07

>gb|ACO24432.1| riboflavin biosynthesis protein [Elaeis oleifera]
          Length = 409

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = +3

Query: 3   LTPITKENKRYLETKRLKMGHIYNSEFNGRLTGPAEKTSSDEPNQAS 143
           LTPITK+N+RYLETKR+KMG IY SEFNG LTG  + T S+  + AS
Sbjct: 363 LTPITKDNRRYLETKRIKMGPIYGSEFNGCLTGWVDSTRSNGQHPAS 409


>ref|XP_004160211.1| PREDICTED: riboflavin biosynthesis protein ribBA,
           chloroplastic-like [Cucumis sativus]
          Length = 546

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +3

Query: 3   LTPITKENKRYLETKRLKMGHIYNSEFNGRLTGPAEKTSSDEPNQAS 143
           +TPITK+NKRYLETKR KMGH+YN EF GRL    ++  +   + AS
Sbjct: 495 ITPITKDNKRYLETKRAKMGHVYNLEFGGRLRNRIDEHETSNGSVAS 541


>ref|XP_004150928.1| PREDICTED: riboflavin biosynthesis protein ribBA,
           chloroplastic-like [Cucumis sativus]
          Length = 546

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +3

Query: 3   LTPITKENKRYLETKRLKMGHIYNSEFNGRLTGPAEKTSSDEPNQAS 143
           +TPITK+NKRYLETKR KMGH+YN EF GRL    ++  +   + AS
Sbjct: 495 ITPITKDNKRYLETKRAKMGHVYNLEFGGRLRNRIDEHETSNGSVAS 541


>ref|XP_003543930.1| PREDICTED: riboflavin biosynthesis protein ribBA,
           chloroplastic-like [Glycine max]
          Length = 550

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 4/48 (8%)
 Frame = +3

Query: 12  ITKENKRYLETKRLKMGHIYNSEFNGRL----TGPAEKTSSDEPNQAS 143
           ITKENKRYLETKR+KMGH+Y SEFN +L    TG  +  S D+ N A+
Sbjct: 501 ITKENKRYLETKRVKMGHVYGSEFNSKLNHQDTGNGKANSDDDSNAAA 548


>ref|XP_002534352.1| GTP cyclohydrolase II, putative [Ricinus communis]
           gi|223525444|gb|EEF28032.1| GTP cyclohydrolase II,
           putative [Ricinus communis]
          Length = 538

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/48 (60%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
 Frame = +3

Query: 3   LTPITKENKRYLETKRLKMGHIYNSEFNGRLTG---PAEKTSSDEPNQ 137
           LTPIT+ENK+YLETKR KMGHIY S+  G LTG   P    S+D P +
Sbjct: 490 LTPITEENKKYLETKRTKMGHIYGSDLQGPLTGFINPDINNSTDSPEE 537


Top